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- W3164172330 abstract "With advancements in omics technologies, the range of biological processes where long non-coding RNAs (lncRNAs) are involved, is expanding extensively, thereby generating the need to develop lncRNA annotation resources. Although, there are a plethora of resources for annotating genes, despite the extensive corpus of lncRNA literature, the available resources with lncRNA ontology annotations are rare.We present a lncRNA annotation extractor and repository (Lantern), developed using PubMed's abstract retrieval engine and NCBO's recommender annotation system. Lantern's annotations were benchmarked against lncRNAdb's manually curated free text. Benchmarking analysis suggested that Lantern has a recall of 0.62 against lncRNAdb for 182 lncRNAs and precision of 0.8. Additionally, we also annotated lncRNAs with multiple omics annotations, including predicted cis-regulatory TFs, interactions with RBPs, tissue-specific expression profiles, protein co-expression networks, coding potential, sub-cellular localization, and SNPs for ~ 11,000 lncRNAs in the human genome, providing a one-stop dynamic visualization platform.Lantern integrates a novel, accurate semi-automatic ontology annotation engine derived annotations combined with a variety of multi-omics annotations for lncRNAs, to provide a central web resource for dissecting the functional dynamics of long non-coding RNAs and to facilitate future hypothesis-driven experiments. The annotation pipeline and a web resource with current annotations for human lncRNAs are freely available on sysbio.lab.iupui.edu/lantern." @default.
- W3164172330 created "2021-06-07" @default.
- W3164172330 creator A5033328084 @default.
- W3164172330 creator A5066167699 @default.
- W3164172330 creator A5091077791 @default.
- W3164172330 date "2021-05-26" @default.
- W3164172330 modified "2023-10-06" @default.
- W3164172330 title "Lantern: an integrative repository of functional annotations for lncRNAs in the human genome" @default.
- W3164172330 cites W1490161904 @default.
- W3164172330 cites W1579099762 @default.
- W3164172330 cites W1611642663 @default.
- W3164172330 cites W1622055787 @default.
- W3164172330 cites W1879996757 @default.
- W3164172330 cites W1914535805 @default.
- W3164172330 cites W1965588691 @default.
- W3164172330 cites W1974720903 @default.
- W3164172330 cites W1994978035 @default.
- W3164172330 cites W1995758738 @default.
- W3164172330 cites W2003870059 @default.
- W3164172330 cites W2006936482 @default.
- W3164172330 cites W2008446684 @default.
- W3164172330 cites W2011598785 @default.
- W3164172330 cites W2018838463 @default.
- W3164172330 cites W2024846717 @default.
- W3164172330 cites W2027267723 @default.
- W3164172330 cites W2029919331 @default.
- W3164172330 cites W2034264501 @default.
- W3164172330 cites W2039816251 @default.
- W3164172330 cites W2043574383 @default.
- W3164172330 cites W2044672052 @default.
- W3164172330 cites W2049541774 @default.
- W3164172330 cites W2051816266 @default.
- W3164172330 cites W2052503008 @default.
- W3164172330 cites W2056499061 @default.
- W3164172330 cites W2067768332 @default.
- W3164172330 cites W2069139855 @default.
- W3164172330 cites W2073749890 @default.
- W3164172330 cites W2080274935 @default.
- W3164172330 cites W2087377443 @default.
- W3164172330 cites W2093404711 @default.
- W3164172330 cites W2096465161 @default.
- W3164172330 cites W2102364475 @default.
- W3164172330 cites W2102619694 @default.
- W3164172330 cites W2104990432 @default.
- W3164172330 cites W2105349784 @default.
- W3164172330 cites W2110023802 @default.
- W3164172330 cites W2112189313 @default.
- W3164172330 cites W2119726708 @default.
- W3164172330 cites W2122732537 @default.
- W3164172330 cites W2124045889 @default.
- W3164172330 cites W2125484161 @default.
- W3164172330 cites W2128983843 @default.
- W3164172330 cites W2130313087 @default.
- W3164172330 cites W2134296985 @default.
- W3164172330 cites W2134625814 @default.
- W3164172330 cites W2136430672 @default.
- W3164172330 cites W2136550485 @default.
- W3164172330 cites W2140952049 @default.
- W3164172330 cites W2148542126 @default.
- W3164172330 cites W2157009395 @default.
- W3164172330 cites W2157512257 @default.
- W3164172330 cites W2161025552 @default.
- W3164172330 cites W2165423269 @default.
- W3164172330 cites W2165697084 @default.
- W3164172330 cites W2166898290 @default.
- W3164172330 cites W2167491742 @default.
- W3164172330 cites W2170282111 @default.
- W3164172330 cites W2174181728 @default.
- W3164172330 cites W2176555004 @default.
- W3164172330 cites W2179127114 @default.
- W3164172330 cites W2193074800 @default.
- W3164172330 cites W2259938310 @default.
- W3164172330 cites W2335029242 @default.
- W3164172330 cites W2461492611 @default.
- W3164172330 cites W2462719807 @default.
- W3164172330 cites W2505384565 @default.
- W3164172330 cites W2505710738 @default.
- W3164172330 cites W2531909185 @default.
- W3164172330 cites W2550451908 @default.
- W3164172330 cites W2553758616 @default.
- W3164172330 cites W2559028527 @default.
- W3164172330 cites W2566575894 @default.
- W3164172330 cites W2567102764 @default.
- W3164172330 cites W2568859793 @default.
- W3164172330 cites W2572870642 @default.
- W3164172330 cites W2583633443 @default.
- W3164172330 cites W2590032828 @default.
- W3164172330 cites W2604844899 @default.
- W3164172330 cites W2611167482 @default.
- W3164172330 cites W2615786037 @default.
- W3164172330 cites W2723674553 @default.
- W3164172330 cites W2724618339 @default.
- W3164172330 cites W2733972655 @default.
- W3164172330 cites W2740574829 @default.
- W3164172330 cites W2747438803 @default.
- W3164172330 cites W2751624968 @default.
- W3164172330 cites W2760015231 @default.
- W3164172330 cites W2761410752 @default.
- W3164172330 cites W2765316818 @default.
- W3164172330 cites W2769423941 @default.