FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3165663003> ?p ?o ?g. }

• W3165663003 endingPage "395" @default.
• W3165663003 startingPage "382" @default.
• W3165663003 abstract "Abstract Taxa are frequently labeled incertae sedis when their placement is debated at ranks above the species level, such as their subgeneric, generic, or subtribal placement. This is a pervasive problem in groups with complex systematics due to difficulties in identifying suitable synapomorphies. In this study, we propose combining DNA barcodes with a multilocus backbone phylogeny in order to assign taxa to genus or other higher-level categories. This sampling strategy generates molecular matrices containing large amounts of missing data that are not distributed randomly: barcodes are sampled for all representatives, and additional markers are sampled only for a small percentage. We investigate the effects of the degree and randomness of missing data on phylogenetic accuracy using simulations for up to 100 markers in 1000-tips trees, as well as a real case: the subtribe Polyommatina (Lepidoptera: Lycaenidae), a large group including numerous species with unresolved taxonomy. Our simulation tests show that when a strategic and representative selection of species for higher-level categories has been made for multigene sequencing (approximately one per simulated genus), the addition of this multigene backbone DNA data for as few as 5–10% of the specimens in the total data set can produce high-quality phylogenies, comparable to those resulting from 100% multigene sampling. In contrast, trees based exclusively on barcodes performed poorly. This approach was applied to a 1365-specimen data set of Polyommatina (including ca. 80% of described species), with nearly 8% of representative species included in the multigene backbone and the remaining 92% included only by mitochondrial COI barcodes, a phylogeny was generated that highlighted potential misplacements, unrecognized major clades, and placement for incertae sedis taxa. We use this information to make systematic rearrangements within Polyommatina, and to describe two new genera. Finally, we propose a systematic workflow to assess higher-level taxonomy in hyperdiverse groups. This research identifies an additional, enhanced value of DNA barcodes for improvements in higher-level systematics using large data sets. [Birabiro; DNA barcoding; incertae sedis; Kipepeo; Lycaenidae; missing data; phylogenomic; phylogeny; Polyommatina; supermatrix; systematics; taxonomy]" @default.
• W3165663003 created "2021-06-07" @default.
• W3165663003 creator A5013481805 @default.
• W3165663003 creator A5038739696 @default.
• W3165663003 creator A5063641005 @default.
• W3165663003 creator A5078756306 @default.
• W3165663003 date "2021-07-19" @default.
• W3165663003 modified "2023-10-15" @default.
• W3165663003 title "DNA Barcodes Combined with Multilocus Data of Representative Taxa Can Generate Reliable Higher-Level Phylogenies" @default.
• W3165663003 cites W1416053686 @default.
• W3165663003 cites W1965612692 @default.
• W3165663003 cites W1969042907 @default.
• W3165663003 cites W1969378935 @default.
• W3165663003 cites W1980777164 @default.
• W3165663003 cites W1985530721 @default.
• W3165663003 cites W1988170736 @default.
• W3165663003 cites W1991821268 @default.
• W3165663003 cites W1995824068 @default.
• W3165663003 cites W1997995045 @default.
• W3165663003 cites W2005238069 @default.
• W3165663003 cites W2018075968 @default.
• W3165663003 cites W2022199462 @default.
• W3165663003 cites W2031508099 @default.
• W3165663003 cites W2032227091 @default.
• W3165663003 cites W2060425093 @default.
• W3165663003 cites W2068225247 @default.
• W3165663003 cites W2082473664 @default.
• W3165663003 cites W2088482819 @default.
• W3165663003 cites W2094939159 @default.
• W3165663003 cites W2096641211 @default.
• W3165663003 cites W2096768833 @default.
• W3165663003 cites W2099459260 @default.
• W3165663003 cites W2099901798 @default.
• W3165663003 cites W2103338216 @default.
• W3165663003 cites W2103380039 @default.
• W3165663003 cites W2103546861 @default.
• W3165663003 cites W2110396783 @default.
• W3165663003 cites W2111414304 @default.
• W3165663003 cites W2118079256 @default.
• W3165663003 cites W2119033868 @default.
• W3165663003 cites W2119162865 @default.
• W3165663003 cites W2119660204 @default.
• W3165663003 cites W2125070329 @default.
• W3165663003 cites W2125359798 @default.
• W3165663003 cites W2126487146 @default.
• W3165663003 cites W2128188644 @default.
• W3165663003 cites W2129505888 @default.
• W3165663003 cites W2130362098 @default.
• W3165663003 cites W2131961145 @default.
• W3165663003 cites W2135050937 @default.
• W3165663003 cites W2136353610 @default.
• W3165663003 cites W2140099453 @default.
• W3165663003 cites W2141052558 @default.
• W3165663003 cites W2142718629 @default.
• W3165663003 cites W2144074455 @default.
• W3165663003 cites W2145608399 @default.
• W3165663003 cites W2148346591 @default.
• W3165663003 cites W2148376910 @default.
• W3165663003 cites W2149729335 @default.
• W3165663003 cites W2150815933 @default.
• W3165663003 cites W2152933358 @default.
• W3165663003 cites W2156235708 @default.
• W3165663003 cites W2156524622 @default.
• W3165663003 cites W2157036445 @default.
• W3165663003 cites W2167193190 @default.
• W3165663003 cites W2175367716 @default.
• W3165663003 cites W2176633348 @default.
• W3165663003 cites W2177970070 @default.
• W3165663003 cites W2196978053 @default.
• W3165663003 cites W2298253512 @default.
• W3165663003 cites W2315497846 @default.
• W3165663003 cites W2467625864 @default.
• W3165663003 cites W2474432601 @default.
• W3165663003 cites W2476680830 @default.
• W3165663003 cites W2485266137 @default.
• W3165663003 cites W2563535234 @default.
• W3165663003 cites W2596149449 @default.
• W3165663003 cites W2614081736 @default.
• W3165663003 cites W2801159594 @default.
• W3165663003 cites W2895077024 @default.
• W3165663003 cites W2949247626 @default.
• W3165663003 cites W2950355266 @default.
• W3165663003 cites W2951356747 @default.
• W3165663003 cites W2951464304 @default.
• W3165663003 cites W3005235420 @default.
• W3165663003 cites W4247249299 @default.
• W3165663003 doi "https://doi.org/10.1093/sysbio/syab038" @default.
• W3165663003 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34022059" @default.
• W3165663003 hasPublicationYear "2021" @default.
• W3165663003 type Work @default.
• W3165663003 sameAs 3165663003 @default.
• W3165663003 citedByCount "29" @default.
• W3165663003 countsByYear W31656630032021 @default.
• W3165663003 countsByYear W31656630032022 @default.
• W3165663003 countsByYear W31656630032023 @default.
• W3165663003 crossrefType "journal-article" @default.
• W3165663003 hasAuthorship W3165663003A5013481805 @default.
• W3165663003 hasAuthorship W3165663003A5038739696 @default.

• next