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• W3170784920 endingPage "6224" @default.
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• W3170784920 abstract "A forward genetic approach is a powerful tool for identifying the genes underlying the phenotypes of interest. However, the conventional map-based cloning method is lengthy, requires a large mapping population and confirmation of many candidate genes in a broad genetic region to clone the causal variant. The whole-genome sequencing method clones the variants with a certain failure probability for multiple reasons, especially for heterozygotes, and could not be used to clone the mutation of epigenetic modifications. Here, we applied the highly complementary characteristics of these two methods and developed a sequencing-based mapping method (SBM) for identifying the location of plant variants effectively with a small population and low cost, which is very user-friendly for most popular laboratories. This method used the whole-genome sequencing data of two pooled populations to screen out enough markers. These markers were used to identify and narrow the candidate region by analyzing the marker-indexes and recombinants. Finally, the possible mutational sites were identified using the whole-genome sequencing data and verified in individual mutants. To elaborate the new method, we displayed the cloned processes in one Arabidopsis heterozygous mutant and two rice homozygous mutants. Thus, the sequencing-based mapping method could clone effectively different types of plant mutations and was a powerful tool for studying the functions of plant genes in the species with known genomic sequences." @default.
• W3170784920 created "2021-06-22" @default.
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• W3170784920 date "2021-06-09" @default.
• W3170784920 modified "2023-10-10" @default.
• W3170784920 title "The Sequencing-Based Mapping Method for Effectively Cloning Plant Mutated Genes" @default.
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• W3170784920 doi "https://doi.org/10.3390/ijms22126224" @default.
• W3170784920 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/8226582" @default.
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