FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3173644959> ?p ?o ?g. }

• W3173644959 endingPage "158" @default.
• W3173644959 startingPage "146" @default.
• W3173644959 abstract "Protein fossils, i.e. noncoding DNA descended from coding DNA, arise frequently from transposable elements (TEs), decayed genes, and viral integrations. They can reveal, and mislead about, evolutionary history and relationships. They have been detected by comparing DNA to protein sequences, but current methods are not optimized for this task. We describe a powerful DNA-protein homology search method. We use a 64 (times ) 21 substitution matrix, which is fitted to sequence data, automatically learning the genetic code. We detect subtly homologous regions by considering alternative possible alignments between them, and calculate significance (probability of occurring by chance between random sequences). Our method detects TE protein fossils much more sensitively than blastx, and ({>}10{times }) faster. Of the (sim )7 major categories of eukaryotic TE, three were long thought absent in mammals: we find two of them in the human genome, polinton and DIRS/Ngaro. This method increases our power to find ancient fossils, and perhaps to detect non-standard genetic codes. The alternative-alignments and significance paradigm is not specific to DNA-protein comparison, and could benefit homology search generally." @default.
• W3173644959 created "2021-07-05" @default.
• W3173644959 creator A5012221235 @default.
• W3173644959 creator A5055829507 @default.
• W3173644959 date "2021-01-01" @default.
• W3173644959 modified "2023-10-09" @default.
• W3173644959 title "Improved DNA-versus-Protein Homology Search for Protein Fossils" @default.
• W3173644959 cites W1975140329 @default.
• W3173644959 cites W1985423799 @default.
• W3173644959 cites W1996112765 @default.
• W3173644959 cites W2014753445 @default.
• W3173644959 cites W2039337517 @default.
• W3173644959 cites W2072340282 @default.
• W3173644959 cites W2095058191 @default.
• W3173644959 cites W2100291962 @default.
• W3173644959 cites W2103306615 @default.
• W3173644959 cites W2106263380 @default.
• W3173644959 cites W2110182011 @default.
• W3173644959 cites W2115385703 @default.
• W3173644959 cites W2118670112 @default.
• W3173644959 cites W2118876599 @default.
• W3173644959 cites W2123851326 @default.
• W3173644959 cites W2124495196 @default.
• W3173644959 cites W2128016314 @default.
• W3173644959 cites W2130734064 @default.
• W3173644959 cites W2138776905 @default.
• W3173644959 cites W2141445158 @default.
• W3173644959 cites W2153848372 @default.
• W3173644959 cites W2158714788 @default.
• W3173644959 cites W2160385629 @default.
• W3173644959 cites W2162758337 @default.
• W3173644959 cites W2283619470 @default.
• W3173644959 cites W2594397242 @default.
• W3173644959 cites W2610344215 @default.
• W3173644959 cites W2743321683 @default.
• W3173644959 cites W2949968272 @default.
• W3173644959 cites W2950954328 @default.
• W3173644959 cites W3087081867 @default.
• W3173644959 cites W3097391944 @default.
• W3173644959 cites W3119908887 @default.
• W3173644959 cites W4234711904 @default.
• W3173644959 cites W4245668478 @default.
• W3173644959 doi "https://doi.org/10.1007/978-3-030-74432-8_11" @default.
• W3173644959 hasPublicationYear "2021" @default.
• W3173644959 type Work @default.
• W3173644959 sameAs 3173644959 @default.
• W3173644959 citedByCount "3" @default.
• W3173644959 countsByYear W31736449592022 @default.
• W3173644959 countsByYear W31736449592023 @default.
• W3173644959 crossrefType "book-chapter" @default.
• W3173644959 hasAuthorship W3173644959A5012221235 @default.
• W3173644959 hasAuthorship W3173644959A5055829507 @default.
• W3173644959 hasBestOaLocation W31736449592 @default.
• W3173644959 hasConcept C104317684 @default.
• W3173644959 hasConcept C141231307 @default.
• W3173644959 hasConcept C165525559 @default.
• W3173644959 hasConcept C187882448 @default.
• W3173644959 hasConcept C197077220 @default.
• W3173644959 hasConcept C4918238 @default.
• W3173644959 hasConcept C51679486 @default.
• W3173644959 hasConcept C54355233 @default.
• W3173644959 hasConcept C552990157 @default.
• W3173644959 hasConcept C64554109 @default.
• W3173644959 hasConcept C64894306 @default.
• W3173644959 hasConcept C70721500 @default.
• W3173644959 hasConcept C78458016 @default.
• W3173644959 hasConcept C86803240 @default.
• W3173644959 hasConcept C91779695 @default.
• W3173644959 hasConceptScore W3173644959C104317684 @default.
• W3173644959 hasConceptScore W3173644959C141231307 @default.
• W3173644959 hasConceptScore W3173644959C165525559 @default.
• W3173644959 hasConceptScore W3173644959C187882448 @default.
• W3173644959 hasConceptScore W3173644959C197077220 @default.
• W3173644959 hasConceptScore W3173644959C4918238 @default.
• W3173644959 hasConceptScore W3173644959C51679486 @default.
• W3173644959 hasConceptScore W3173644959C54355233 @default.
• W3173644959 hasConceptScore W3173644959C552990157 @default.
• W3173644959 hasConceptScore W3173644959C64554109 @default.
• W3173644959 hasConceptScore W3173644959C64894306 @default.
• W3173644959 hasConceptScore W3173644959C70721500 @default.
• W3173644959 hasConceptScore W3173644959C78458016 @default.
• W3173644959 hasConceptScore W3173644959C86803240 @default.
• W3173644959 hasConceptScore W3173644959C91779695 @default.
• W3173644959 hasLocation W31736449591 @default.
• W3173644959 hasLocation W31736449592 @default.
• W3173644959 hasOpenAccess W3173644959 @default.
• W3173644959 hasPrimaryLocation W31736449591 @default.
• W3173644959 hasRelatedWork W1966035825 @default.
• W3173644959 hasRelatedWork W2045313050 @default.
• W3173644959 hasRelatedWork W2066856346 @default.
• W3173644959 hasRelatedWork W2137743910 @default.
• W3173644959 hasRelatedWork W2172109868 @default.
• W3173644959 hasRelatedWork W2386723776 @default.
• W3173644959 hasRelatedWork W332976159 @default.
• W3173644959 hasRelatedWork W4235753716 @default.
• W3173644959 hasRelatedWork W4315619277 @default.
• W3173644959 hasRelatedWork W4315640719 @default.
• W3173644959 isParatext "false" @default.

• next