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- W3174814910 abstract "We have developed two bioinformatic tools to facilitate mining of high throughput genomic and proteomic data. GeneCite, a stand alone Java application searching tool, provides an efficient method of high throughput processing and handling of batch queries in PubMed and UniSTS, the database of citations and the database of sequenced tagged sites (STSs) respectively. It is word search and clustering software that executes multiple queries searching the PubMed literature database. This program provide PubMed search for more than 200 genes at a time and gives a score to gene relatedness in the literature. Using GeneCite, scientists can interconnect two input files via any of the three available Boolean operators at NCBI web domain. After completion of a given search, GeneCite provides a summery of result briefing total number of hits etc., and two output files. First file provides literature citation counts for each given search key, while the other file offers hyperlinks for each query connecting the appropriate result page of the data source. The other tool, PathwayScreen, takes a list of Gene ID numbers and outputs a file listing the pathways that those genes are in and a link to any appropriate resources, namely BioCarta.com. In short, today’s fast growing sphere of bioinformatics, where retrieving precise information with minimum effort and time turns into a major concern, this software could provide a fitting solution. These tools are free and currently available at http://www.biospice.org." @default.
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- W3174814910 date "2006-03-01" @default.
- W3174814910 modified "2023-09-23" @default.
- W3174814910 title "GeneCite and PathwayScreen: web based high throughput bioinformatics search and data mining tools" @default.
- W3174814910 doi "https://doi.org/10.1096/fasebj.20.4.a531-b" @default.
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