FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3183910514> ?p ?o ?g. }

• W3183910514 abstract "Here we report on comprehensive chloroplast (cp) genome analysis of 16 pomegranate ( Punica granatum L.) genotypes representing commercial cultivars, ornamental and wild types, through large-scale sequencing and assembling using next-generation sequencing (NGS) technology. Comparative genome analysis revealed that the size of cp genomes varied from 158,593 bp (in wild, “1201” and “1181”) to 158,662 bp (cultivar, “Gul-e-Shah Red”) among the genotypes, with characteristic quadripartite structures separated by a pair of inverted repeats (IRs). The higher conservation for the total number of coding and non-coding genes (rRNA and tRNA) and their sizes, and IRs (IR-A and IR-B) were observed across all the cp genomes. Interestingly, high variations were observed in sizes of large single copy (LSC, 88,976 to 89,044 bp) and small single copy (SSC, 18,682 to 18,684 bp) regions. Although, the structural organization of newly assembled cp genomes were comparable to that of previously reported cp genomes of pomegranate (“Helow,” “Tunisia,” and “Bhagawa”), the striking differences were observed with the Lagerstroemia lines, viz., Lagerstroemia intermedia (NC_0346620) and Lagerstroemia speciosa (NC_031414), which clearly confirmed previous findings. Furthermore, phylogenetic analysis also revealed that members outside the genus Punica were clubbed into a separate clade. The contraction and expansion analysis revealed that the structural variations in IRs, LSC, and SSC have significantly accounted for the evolution of cp genomes of Punica and L. intermedia over the periods. Microsatellite survey across cp genomes resulted in the identification of a total of 233 to 234 SSRs, with majority of them being mono- (A/T or C/G, 164–165 numbers), followed by di- (AT/AT or AG/CT, 54), tri- (6), tetra- (8), and pentanucleotides (1). Furthermore, the comparative structural variant analyses across cp genomes resulted in the identification of many varietal specific SNP/indel markers. In summary, our study has offered a successful development of large-scale cp genomics resources to leverage future genetic, taxonomical, and phylogenetic studies in pomegranate." @default.
• W3183910514 created "2021-08-02" @default.
• W3183910514 creator A5007895279 @default.
• W3183910514 creator A5017655719 @default.
• W3183910514 creator A5018838714 @default.
• W3183910514 creator A5033591538 @default.
• W3183910514 creator A5057501927 @default.
• W3183910514 creator A5058521102 @default.
• W3183910514 creator A5070918936 @default.
• W3183910514 creator A5078421099 @default.
• W3183910514 creator A5085569553 @default.
• W3183910514 date "2021-07-28" @default.
• W3183910514 modified "2023-10-10" @default.
• W3183910514 title "Chloroplast Genome Sequencing, Comparative Analysis, and Discovery of Unique Cytoplasmic Variants in Pomegranate (Punica granatum L.)" @default.
• W3183910514 cites W118013854 @default.
• W3183910514 cites W1494284268 @default.
• W3183910514 cites W1513850273 @default.
• W3183910514 cites W1547172494 @default.
• W3183910514 cites W1596278042 @default.
• W3183910514 cites W1914148979 @default.
• W3183910514 cites W1969359177 @default.
• W3183910514 cites W1971501473 @default.
• W3183910514 cites W1971864911 @default.
• W3183910514 cites W1975570743 @default.
• W3183910514 cites W1977547080 @default.
• W3183910514 cites W1986383547 @default.
• W3183910514 cites W1988061496 @default.
• W3183910514 cites W1991330646 @default.
• W3183910514 cites W2010214541 @default.
• W3183910514 cites W2028687746 @default.
• W3183910514 cites W2030501559 @default.
• W3183910514 cites W2038169656 @default.
• W3183910514 cites W2044962116 @default.
• W3183910514 cites W2049277087 @default.
• W3183910514 cites W2051134292 @default.
• W3183910514 cites W2056516521 @default.
• W3183910514 cites W2063687233 @default.
• W3183910514 cites W2102720407 @default.
• W3183910514 cites W2105329815 @default.
• W3183910514 cites W2110246558 @default.
• W3183910514 cites W2111342404 @default.
• W3183910514 cites W2112814753 @default.
• W3183910514 cites W2120902911 @default.
• W3183910514 cites W2122673596 @default.
• W3183910514 cites W2124967403 @default.
• W3183910514 cites W2126962694 @default.
• W3183910514 cites W2128318044 @default.
• W3183910514 cites W2131271579 @default.
• W3183910514 cites W2136063136 @default.
• W3183910514 cites W2136624241 @default.
• W3183910514 cites W2148518982 @default.
• W3183910514 cites W2153325555 @default.
• W3183910514 cites W2162393839 @default.
• W3183910514 cites W2163110314 @default.
• W3183910514 cites W2163336815 @default.
• W3183910514 cites W2215627656 @default.
• W3183910514 cites W2300083315 @default.
• W3183910514 cites W2311491794 @default.
• W3183910514 cites W2324511918 @default.
• W3183910514 cites W2356380299 @default.
• W3183910514 cites W2418850225 @default.
• W3183910514 cites W2422772473 @default.
• W3183910514 cites W2434009391 @default.
• W3183910514 cites W2468407498 @default.
• W3183910514 cites W2475158195 @default.
• W3183910514 cites W2527825049 @default.
• W3183910514 cites W2573538289 @default.
• W3183910514 cites W2583128216 @default.
• W3183910514 cites W2612261225 @default.
• W3183910514 cites W2623825679 @default.
• W3183910514 cites W2686944822 @default.
• W3183910514 cites W2728605235 @default.
• W3183910514 cites W2740038868 @default.
• W3183910514 cites W2770149057 @default.
• W3183910514 cites W2774638455 @default.
• W3183910514 cites W2788882023 @default.
• W3183910514 cites W2790341215 @default.
• W3183910514 cites W2808037663 @default.
• W3183910514 cites W2883855109 @default.
• W3183910514 cites W2887205355 @default.
• W3183910514 cites W2888988347 @default.
• W3183910514 cites W2896678214 @default.
• W3183910514 cites W2944710594 @default.
• W3183910514 cites W2945044061 @default.
• W3183910514 cites W2951108467 @default.
• W3183910514 cites W2951362868 @default.
• W3183910514 cites W2975933328 @default.
• W3183910514 cites W2980373194 @default.
• W3183910514 cites W2992976869 @default.
• W3183910514 cites W3015497032 @default.
• W3183910514 cites W3045385330 @default.
• W3183910514 cites W3084201551 @default.
• W3183910514 cites W3103773605 @default.
• W3183910514 cites W3137896045 @default.
• W3183910514 cites W4244565285 @default.
• W3183910514 doi "https://doi.org/10.3389/fgene.2021.704075" @default.
• W3183910514 hasPubMedCentralId "https://www.ncbi.nlm.nih.gov/pmc/articles/8356083" @default.
• W3183910514 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34394192" @default.
• W3183910514 hasPublicationYear "2021" @default.
• W3183910514 type Work @default.

• next