FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3185808532> ?p ?o ?g. }

• W3185808532 endingPage "122" @default.
• W3185808532 startingPage "110" @default.
• W3185808532 abstract "Protein β-turn classification remains an area of ongoing development in structural biology research. While the commonly used nomenclature defining type I, type II and type IV β-turns was introduced in the 1970s and 1980s, refinements of β-turn type definitions have been introduced as recently as 2019 by Dunbrack, Jr and co-workers who expanded the number of β-turn types to 18 (Shapovalov et al, PLOS Computat. Biol., 15, e1006844, 2019). Based on their analysis of 13 030 turns from 1074 ultrahigh resolution (≤1.2 Å) protein structures, they used a new clustering algorithm to expand the definitions used to classify protein β-turns and introduced a new nomenclature system. We recently encountered a specific problem when classifying β-turns in crystal structures of pentapeptide repeat proteins (PRPs) determined in our lab that are largely composed of β-turns that often lie close to, but just outside of, canonical β-turn regions. To address this problem, we devised a new scheme that merges the Klyne-Prelog stereochemistry nomenclature and definitions with the Ramachandran plot. The resulting Klyne-Prelog-modified Ramachandran plot scheme defines 1296 distinct potential β-turn classifications that cover all possible protein β-turn space with a nomenclature that indicates the stereochemistry of i + 1 and i + 2 backbone dihedral angles. The utility of the new classification scheme was illustrated by re-classification of the β-turns in all known protein structures in the PRP superfamily and further assessed using a database of 16 657 high-resolution protein structures (≤1.5 Å) from which 522 776 β-turns were identified and classified." @default.
• W3185808532 created "2021-08-02" @default.
• W3185808532 creator A5063273851 @default.
• W3185808532 creator A5069241881 @default.
• W3185808532 creator A5088230275 @default.
• W3185808532 date "2021-08-16" @default.
• W3185808532 modified "2023-09-27" @default.
• W3185808532 title "Introduction of a new scheme for classifying β‐turns in protein structures" @default.
• W3185808532 cites W1547728614 @default.
• W3185808532 cites W1967429737 @default.
• W3185808532 cites W1988129551 @default.
• W3185808532 cites W2008708467 @default.
• W3185808532 cites W2009828525 @default.
• W3185808532 cites W2016279527 @default.
• W3185808532 cites W2022952094 @default.
• W3185808532 cites W2023593686 @default.
• W3185808532 cites W2023899825 @default.
• W3185808532 cites W2025822492 @default.
• W3185808532 cites W2038147123 @default.
• W3185808532 cites W2041877620 @default.
• W3185808532 cites W2048687098 @default.
• W3185808532 cites W2049902088 @default.
• W3185808532 cites W2062529809 @default.
• W3185808532 cites W2074603176 @default.
• W3185808532 cites W2074655761 @default.
• W3185808532 cites W2075820422 @default.
• W3185808532 cites W2094695671 @default.
• W3185808532 cites W2113403117 @default.
• W3185808532 cites W2126103104 @default.
• W3185808532 cites W2130479394 @default.
• W3185808532 cites W2158266834 @default.
• W3185808532 cites W2160309351 @default.
• W3185808532 cites W2163333444 @default.
• W3185808532 cites W2168757976 @default.
• W3185808532 cites W2518729567 @default.
• W3185808532 cites W2617973038 @default.
• W3185808532 cites W2951687811 @default.
• W3185808532 cites W46808545 @default.
• W3185808532 cites W753125383 @default.
• W3185808532 doi "https://doi.org/10.1002/prot.26190" @default.
• W3185808532 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/34322903" @default.
• W3185808532 hasPublicationYear "2021" @default.
• W3185808532 type Work @default.
• W3185808532 sameAs 3185808532 @default.
• W3185808532 citedByCount "4" @default.
• W3185808532 countsByYear W31858085322022 @default.
• W3185808532 countsByYear W31858085322023 @default.
• W3185808532 crossrefType "journal-article" @default.
• W3185808532 hasAuthorship W3185808532A5063273851 @default.
• W3185808532 hasAuthorship W3185808532A5069241881 @default.
• W3185808532 hasAuthorship W3185808532A5088230275 @default.
• W3185808532 hasConcept C112887158 @default.
• W3185808532 hasConcept C134306372 @default.
• W3185808532 hasConcept C13460635 @default.
• W3185808532 hasConcept C138268822 @default.
• W3185808532 hasConcept C14301744 @default.
• W3185808532 hasConcept C154945302 @default.
• W3185808532 hasConcept C178790620 @default.
• W3185808532 hasConcept C185592680 @default.
• W3185808532 hasConcept C18903297 @default.
• W3185808532 hasConcept C23123220 @default.
• W3185808532 hasConcept C2777299769 @default.
• W3185808532 hasConcept C2779281246 @default.
• W3185808532 hasConcept C32909587 @default.
• W3185808532 hasConcept C33923547 @default.
• W3185808532 hasConcept C41008148 @default.
• W3185808532 hasConcept C45197812 @default.
• W3185808532 hasConcept C47701112 @default.
• W3185808532 hasConcept C514705636 @default.
• W3185808532 hasConcept C55493867 @default.
• W3185808532 hasConcept C58642233 @default.
• W3185808532 hasConcept C59822182 @default.
• W3185808532 hasConcept C65556437 @default.
• W3185808532 hasConcept C71240020 @default.
• W3185808532 hasConcept C77618280 @default.
• W3185808532 hasConcept C85641259 @default.
• W3185808532 hasConcept C86803240 @default.
• W3185808532 hasConcept C89025888 @default.
• W3185808532 hasConceptScore W3185808532C112887158 @default.
• W3185808532 hasConceptScore W3185808532C134306372 @default.
• W3185808532 hasConceptScore W3185808532C13460635 @default.
• W3185808532 hasConceptScore W3185808532C138268822 @default.
• W3185808532 hasConceptScore W3185808532C14301744 @default.
• W3185808532 hasConceptScore W3185808532C154945302 @default.
• W3185808532 hasConceptScore W3185808532C178790620 @default.
• W3185808532 hasConceptScore W3185808532C185592680 @default.
• W3185808532 hasConceptScore W3185808532C18903297 @default.
• W3185808532 hasConceptScore W3185808532C23123220 @default.
• W3185808532 hasConceptScore W3185808532C2777299769 @default.
• W3185808532 hasConceptScore W3185808532C2779281246 @default.
• W3185808532 hasConceptScore W3185808532C32909587 @default.
• W3185808532 hasConceptScore W3185808532C33923547 @default.
• W3185808532 hasConceptScore W3185808532C41008148 @default.
• W3185808532 hasConceptScore W3185808532C45197812 @default.
• W3185808532 hasConceptScore W3185808532C47701112 @default.
• W3185808532 hasConceptScore W3185808532C514705636 @default.
• W3185808532 hasConceptScore W3185808532C55493867 @default.
• W3185808532 hasConceptScore W3185808532C58642233 @default.

• next