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- W3186282085 abstract "Abstract In the first few weeks of a calf's life, the early colonization of microbes throughout the gastrointestinal tract (GIT) is critical in its digestive system and immunity development. Analyses of data generated from next-generation sequencing platforms have revolutionized the understanding of host-associated microbial communities; these analyses can be done through a variety of bioinformatics pipelines. This study aimed to describe the diversity and evolution of gastrointestinal tract microbial communities in the first days of life of calves; for which we used the USEARCH and KRAKEN2 algorithms, in terms of alpha and beta diversity analysis in the rumen and jejunum contents of calves from 0, 7, 28, 42 days-born in the Mexican Tropic and its changes. The two pipelines detected similar abundance distributions in the three most abundant taxa Proteobacteria, Firmicutes, and Bacteroidetes. The present study revealed the changes occurring in the rumen and jejunum ecosystem in the first week of life, reflected by a decline in the phylum Proteobacteria and an increase in phylum Bacteroidetes in rumen and Firmicutes in the jejunum. We observed an increase in the similarity in the phylum taxa with age, suggesting a homogeneous and specific mature community, compared with the primary community." @default.
- W3186282085 created "2021-08-02" @default.
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- W3186282085 date "2021-07-28" @default.
- W3186282085 modified "2023-10-01" @default.
- W3186282085 title "Characterization of The Microbiome That Colonizes The Digestive Tract of Calves From 0 To 42 Days of Age, Raised In The Mexican Tropics." @default.
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- W3186282085 doi "https://doi.org/10.21203/rs.3.rs-741679/v1" @default.
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