FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W3190302607> ?p ?o ?g. }

• W3190302607 abstract "Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). By enhancing nutrient uptake from the soil and through modulation of plant phytohormone status and metabolism, PGPR can increase the stress tolerance, growth and yield of crop plants. Many important PGPR as well as plant pathogens belong to the genus Pseudomonas . There is, however, uncertainty on the divide between phytobeneficial and phytopathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here the Genome properties (GP) common biological pathways annotation system was applied to establish the relationship between the genome wide GP composition and the plant-associated phenotype of 91 Pseudomonas strains representing both phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A validation dataset of 67 new strains confirmed the importance of the selected features for classification. A number of unexpected discriminating features were found, suggesting involvement of novel molecular mechanisms. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated phenotype. Author summary With a growing population the need to double the agricultural food production is specified. Simultaneously, there is an urgent need to implement sustainable and climate change resilient agricultural practices that preserve natural ecosystems. Cooperative microbiomes play important positive roles in plant growth development and fitness. Properly tuned, these microbiomes can significantly reduce the need for synthetic fertilizers and can replace chemicals in crop pest control. To select beneficial candidates, their traits need to be described and likewise, potential detrimental traits should be avoided. Here we applied GP-based comparative functional genomics, enrichment analysis and Random Forest model fitting to compare known phytobeneficial and phytopathogenic Pseudomonas strains. A number of unexpected discriminating features were found suggesting the involvement of novel molecular mechanisms." @default.
• W3190302607 created "2021-08-16" @default.
• W3190302607 creator A5019099291 @default.
• W3190302607 creator A5024394720 @default.
• W3190302607 creator A5041170743 @default.
• W3190302607 creator A5072522026 @default.
• W3190302607 creator A5075437136 @default.
• W3190302607 date "2021-07-30" @default.
• W3190302607 modified "2023-09-27" @default.
• W3190302607 title "Classification of the plant-associated phenotype of <i>Pseudomonas</i> strains using genome properties and machine learning" @default.
• W3190302607 cites W1520812622 @default.
• W3190302607 cites W1590746527 @default.
• W3190302607 cites W1786268878 @default.
• W3190302607 cites W1806747573 @default.
• W3190302607 cites W1995338871 @default.
• W3190302607 cites W2006635484 @default.
• W3190302607 cites W2027701911 @default.
• W3190302607 cites W2032727192 @default.
• W3190302607 cites W2038117808 @default.
• W3190302607 cites W2055455922 @default.
• W3190302607 cites W2061448692 @default.
• W3190302607 cites W2061871661 @default.
• W3190302607 cites W2079622119 @default.
• W3190302607 cites W2080120324 @default.
• W3190302607 cites W2089410397 @default.
• W3190302607 cites W2089774081 @default.
• W3190302607 cites W2101291993 @default.
• W3190302607 cites W2104267395 @default.
• W3190302607 cites W2109867978 @default.
• W3190302607 cites W2111331074 @default.
• W3190302607 cites W2119212891 @default.
• W3190302607 cites W2129732332 @default.
• W3190302607 cites W2142365163 @default.
• W3190302607 cites W2143485490 @default.
• W3190302607 cites W2159574993 @default.
• W3190302607 cites W2166915898 @default.
• W3190302607 cites W2172035574 @default.
• W3190302607 cites W2179324586 @default.
• W3190302607 cites W2206071891 @default.
• W3190302607 cites W2254077592 @default.
• W3190302607 cites W2311209919 @default.
• W3190302607 cites W2342623340 @default.
• W3190302607 cites W2560504383 @default.
• W3190302607 cites W2586438326 @default.
• W3190302607 cites W2625367954 @default.
• W3190302607 cites W2751452222 @default.
• W3190302607 cites W2766673123 @default.
• W3190302607 cites W2781907349 @default.
• W3190302607 cites W2897314349 @default.
• W3190302607 cites W2898402099 @default.
• W3190302607 cites W2898548494 @default.
• W3190302607 cites W2900102202 @default.
• W3190302607 cites W2911964244 @default.
• W3190302607 cites W2934653834 @default.
• W3190302607 cites W2941495319 @default.
• W3190302607 cites W2950354111 @default.
• W3190302607 cites W2952363143 @default.
• W3190302607 cites W2953409640 @default.
• W3190302607 cites W2965167849 @default.
• W3190302607 cites W2972267881 @default.
• W3190302607 cites W3028124889 @default.
• W3190302607 cites W3104760275 @default.
• W3190302607 cites W3120478666 @default.
• W3190302607 doi "https://doi.org/10.1101/2021.07.30.454435" @default.
• W3190302607 hasPublicationYear "2021" @default.
• W3190302607 type Work @default.
• W3190302607 sameAs 3190302607 @default.
• W3190302607 citedByCount "0" @default.
• W3190302607 crossrefType "posted-content" @default.
• W3190302607 hasAuthorship W3190302607A5019099291 @default.
• W3190302607 hasAuthorship W3190302607A5024394720 @default.
• W3190302607 hasAuthorship W3190302607A5041170743 @default.
• W3190302607 hasAuthorship W3190302607A5072522026 @default.
• W3190302607 hasAuthorship W3190302607A5075437136 @default.
• W3190302607 hasBestOaLocation W31903026071 @default.
• W3190302607 hasConcept C104317684 @default.
• W3190302607 hasConcept C127716648 @default.
• W3190302607 hasConcept C130073038 @default.
• W3190302607 hasConcept C141231307 @default.
• W3190302607 hasConcept C1422475 @default.
• W3190302607 hasConcept C143121216 @default.
• W3190302607 hasConcept C144024400 @default.
• W3190302607 hasConcept C149923435 @default.
• W3190302607 hasConcept C150903083 @default.
• W3190302607 hasConcept C2781463711 @default.
• W3190302607 hasConcept C2908647359 @default.
• W3190302607 hasConcept C523546767 @default.
• W3190302607 hasConcept C54355233 @default.
• W3190302607 hasConcept C70721500 @default.
• W3190302607 hasConcept C86626682 @default.
• W3190302607 hasConcept C86803240 @default.
• W3190302607 hasConceptScore W3190302607C104317684 @default.
• W3190302607 hasConceptScore W3190302607C127716648 @default.
• W3190302607 hasConceptScore W3190302607C130073038 @default.
• W3190302607 hasConceptScore W3190302607C141231307 @default.
• W3190302607 hasConceptScore W3190302607C1422475 @default.
• W3190302607 hasConceptScore W3190302607C143121216 @default.
• W3190302607 hasConceptScore W3190302607C144024400 @default.
• W3190302607 hasConceptScore W3190302607C149923435 @default.
• W3190302607 hasConceptScore W3190302607C150903083 @default.

• next