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- W3195056670 abstract "Cell type annotation is important in the analysis of single-cell RNA-seq data. CellO is a machine-learning-based tool for annotating cells using the Cell Ontology, a rich hierarchy of known cell types. We provide a protocol for using the CellO Python package to annotate human cells. We demonstrate how to use CellO in conjunction with Scanpy, a Python library for performing single-cell analysis, annotate a lung tissue data set, interpret its hierarchically structured cell type annotations, and create publication-ready figures. For complete details on the use and execution of this protocol, please refer to Bernstein et al. (2021)." @default.
- W3195056670 created "2021-08-30" @default.
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- W3195056670 date "2021-09-01" @default.
- W3195056670 modified "2023-10-04" @default.
- W3195056670 title "Annotating cell types in human single-cell RNA-seq data with CellO" @default.
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- W3195056670 doi "https://doi.org/10.1016/j.xpro.2021.100705" @default.
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