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• W3199796111 abstract "Long interspersed nuclear elements (LINEs) are retrotransposons that contribute to genetic variation in the human genome. LINE-1 elements in larger-scale studies are challenging to identify using sequencing technologies due to cost and scalability. We developed an approach using optical mapping for detection of full-length LINE-1 insertions and 10× sequencing for confirmation. We found 51 true positive full-length LINE-1 insertions, of which 4 are novel insertions, in NA12878. Repeating our analysis on a larger sample set representing 26 populations, we identified 329 full-length LINE-1 elements, of which 123 are novel. 24.8% of these 329 LINE-1 insertions were shared amongst all 5 superpopulations (AFR, AMR, EUR, EAS, SAS). The African superpopulation has a higher percentage of population-specific LINE-1 insertions than any other superpopulation. These data indicate that our approach can provide high-speed, cost-effective, and increased accuracy for LINE-1 detection. These data also provide an insight into variations of LINE-1 elements between different populations." @default.
• W3199796111 created "2021-09-27" @default.
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• W3199796111 date "2021-11-01" @default.
• W3199796111 modified "2023-09-27" @default.
• W3199796111 title "Characterization of full-length LINE-1 insertions in 154 genomes" @default.
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• W3199796111 doi "https://doi.org/10.1016/j.ygeno.2021.09.011" @default.
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