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- W3204674946 abstract "Abstract Background Spinach is a beneficial annual vegetable species and sensitive to the bolting or early flowering, which causes a large reduction in quality and productivity. Indeed, bolting is an event induced by the coordinated effects of various environmental factors and endogenous genetic components. Although some key flowering responsive genes have been identified in spinach, non-coding RNA molecules like long non-coding RNAs (lncRNAs) were not investigated yet. Herein, we used bioinformatic approaches to analyze the transcriptome datasets from two different accessions Viroflay and Kashan at two vegetative and reproductive stages to reveal novel lncRNAs and the construction of the lncRNA-mRNA co-expression network. Additionally, correlations among gene expression modules and phenotypic traits were investigated; day to flowering was chosen as our interesting trait. Results In the present study, we identified a total of 1141 lncRNAs, of which 111 were differentially expressed between vegetative and reproductive stages. The GO and KEGG analyses carried out on the cis target gene of lncRNAs showed that the lncRNAs play an important role in the regulation of flowering spinach. Network analysis pinpointed several well-known flowering-related genes such as ELF , COL1 , FLT , and FPF1 and also some putative TFs like MYB, WRKY, GATA, and MADS-box that are important regulators of flowering in spinach and could be potential targets for lncRNAs. Conclusions This study is the first report on identifying bolting and flowering-related lncRNAs based on transcriptome sequencing in spinach, which provides a useful resource for future functional genomics studies, genes expression researches, evaluating genes regulatory networks and molecular breeding programs in the regulation of the genetic mechanisms related to bolting in spinach." @default.
- W3204674946 created "2021-10-11" @default.
- W3204674946 creator A5000532793 @default.
- W3204674946 creator A5001805808 @default.
- W3204674946 creator A5004734703 @default.
- W3204674946 creator A5012910368 @default.
- W3204674946 creator A5015096736 @default.
- W3204674946 creator A5032749099 @default.
- W3204674946 creator A5066526365 @default.
- W3204674946 date "2021-09-30" @default.
- W3204674946 modified "2023-10-10" @default.
- W3204674946 title "Global identification of long non-coding RNAs involved in the induction of spinach flowering" @default.
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