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• W3208059236 abstract "Abstract Most known pathogenic mutations occur in protein-coding regions of DNA and change the way proteins are made. Taking protein structure into account has therefore provided great insight into the molecular mechanisms underlying human genetic disease. While there has been much focus on how mutations can disrupt protein structure and thus cause a loss of function (LOF), alternative mechanisms, specifically dominant-negative (DN) and gain-of-function (GOF) effects, are less understood. Here, we have investigated the protein-level effects of pathogenic missense mutations associated with different molecular mechanisms. We observe striking differences between recessive vs dominant, and LOF vs non-LOF mutations, with dominant, non-LOF disease mutations having much milder effects on protein structure, and DN mutations being highly enriched at protein interfaces. We also find that nearly all computational variant effect predictors underperform on non-LOF mutations, even those based solely on sequence conservation. However, we do find that non-LOF mutations could potentially be identified by their tendency to cluster in three-dimensional space. Overall, our work suggests that many pathogenic mutations that act via DN and GOF mutations are likely being missed by current variant prioritisation strategies, but that there is considerable scope to improve computational predictions through consideration of molecular disease mechanisms." @default.
• W3208059236 created "2021-11-08" @default.
• W3208059236 creator A5002238592 @default.
• W3208059236 creator A5010152179 @default.
• W3208059236 creator A5080935416 @default.
• W3208059236 date "2021-10-24" @default.
• W3208059236 modified "2023-09-23" @default.
• W3208059236 title "Loss-of-function, gain-of-function and dominant-negative mutations have profoundly different effects on protein structure: implications for variant effect prediction" @default.
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• W3208059236 doi "https://doi.org/10.1101/2021.10.23.465554" @default.
• W3208059236 hasPublicationYear "2021" @default.
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