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• W3217367055 endingPage "100087" @default.
• W3217367055 startingPage "100087" @default.
• W3217367055 abstract "Photobacterium (P.) is a genus widely studied in regards to its association with and ubiquitous presence in marine environments. However, certain species (P. phosphoreum, P. carnosum, P. iliopiscarium) have been recently described to colonize and spoil raw meats without a marine link. We have studied 27 strains from meat as well as 26 strains from marine environments in order to probe for intraspecies marine/terrestrial subpopulations and identify distinct genomic features acquired by environmental adaptation. We have conducted phylogenetic analysis (MLSA, ANI, fur, codon usage), search of plasmids (plasmidSPADES), phages (PHASTER), CRISPR-cas operons (CRISPR-finder) and secondary metabolites gene clusters (antiSMASH, BAGEL), in addition to a targeted gene search for specific pathways (e.g. TCA cycle, pentose phosphate, respiratory chain) and elements relevant for growth, adaptation and competition (substrate utilization, motility, bioluminescence, sodium and iron transport). P. carnosum appears as a conserved single clade, with one isolate from MAP fish clustering apart that doesn't, however, show distinct features that could indicate different adaptation. The species harbors genes for a wide carbon source utilization (glycogen/starch, maltose, pullulan, fucose) for colonization of diverse niches in its genome. P. phosphoreum is represented by two different clades on the phylogenetic analyses not correlating to their origin or distribution of other features analyzed that can be divided into two novel subspecies based on genome-wide values. A more diverse antimicrobial activity (sactipeptides, microcins), production of secondary metabolites (siderophores and arylpolyenes), stress response and adaptation (bioluminescence, sodium transporters, catalase, high affinity for oxygen cytochrome cbb3 oxidase, DMSO reductase and proton translocating NADH dehydrogenase) is predicted compared to the other species. P. iliopiscarium was divided into two clades based on source of isolation correlating with phylogeny and distribution of several traits. The species shows traits common to the other two species, similar carbon utilization/transport gene conservation as P. carnosum for the meat-isolated strains, and predicted utilization of marine-common DMSO and flagellar cluster for the sea-isolated strains. Results additionally suggest that photobacteria are highly prone to horizontal acquisition/loss of genetic material and genetic transduction, and that it might be a strategy for increasing the frequency of strain- or species-specific features that offers a growth/competition advantage." @default.
• W3217367055 created "2021-12-06" @default.
• W3217367055 creator A5005889205 @default.
• W3217367055 creator A5057794912 @default.
• W3217367055 creator A5077184484 @default.
• W3217367055 date "2021-12-01" @default.
• W3217367055 modified "2023-09-27" @default.
• W3217367055 title "Comparative genomics of Photobacterium species from terrestrial and marine habitats" @default.
• W3217367055 cites W14268687 @default.
• W3217367055 cites W143761352 @default.
• W3217367055 cites W1601501667 @default.
• W3217367055 cites W1886983795 @default.
• W3217367055 cites W1965049226 @default.
• W3217367055 cites W1965144037 @default.
• W3217367055 cites W1968252650 @default.
• W3217367055 cites W1974393912 @default.
• W3217367055 cites W1974520030 @default.
• W3217367055 cites W1978048189 @default.
• W3217367055 cites W1985369751 @default.
• W3217367055 cites W1986115510 @default.
• W3217367055 cites W1986171241 @default.
• W3217367055 cites W1986503675 @default.
• W3217367055 cites W1988969077 @default.
• W3217367055 cites W1991571104 @default.
• W3217367055 cites W1998402771 @default.
• W3217367055 cites W2001777799 @default.
• W3217367055 cites W2004548026 @default.
• W3217367055 cites W2012417928 @default.
• W3217367055 cites W2013817545 @default.
• W3217367055 cites W2016898505 @default.
• W3217367055 cites W2018021681 @default.
• W3217367055 cites W2018816433 @default.
• W3217367055 cites W2023562236 @default.
• W3217367055 cites W2035612098 @default.
• W3217367055 cites W2042034781 @default.
• W3217367055 cites W2054673708 @default.
• W3217367055 cites W2055043387 @default.
• W3217367055 cites W2058053091 @default.
• W3217367055 cites W2063627469 @default.
• W3217367055 cites W2064872021 @default.
• W3217367055 cites W2067907709 @default.
• W3217367055 cites W2072285646 @default.
• W3217367055 cites W2078850217 @default.
• W3217367055 cites W2088220909 @default.
• W3217367055 cites W2089477549 @default.
• W3217367055 cites W2091030812 @default.
• W3217367055 cites W2100363512 @default.
• W3217367055 cites W2100883458 @default.
• W3217367055 cites W2102424972 @default.
• W3217367055 cites W2106169731 @default.
• W3217367055 cites W2106882534 @default.
• W3217367055 cites W2114868025 @default.
• W3217367055 cites W2115005316 @default.
• W3217367055 cites W2115627661 @default.
• W3217367055 cites W2116206245 @default.
• W3217367055 cites W2117946498 @default.
• W3217367055 cites W2118229093 @default.
• W3217367055 cites W2119888547 @default.
• W3217367055 cites W2120902911 @default.
• W3217367055 cites W2127036970 @default.
• W3217367055 cites W2127276118 @default.
• W3217367055 cites W2135639274 @default.
• W3217367055 cites W2137721714 @default.
• W3217367055 cites W2137874567 @default.
• W3217367055 cites W2138988050 @default.
• W3217367055 cites W2143048858 @default.
• W3217367055 cites W2144626747 @default.
• W3217367055 cites W2144775551 @default.
• W3217367055 cites W2159479910 @default.
• W3217367055 cites W2169822620 @default.
• W3217367055 cites W2215523272 @default.
• W3217367055 cites W2259167470 @default.
• W3217367055 cites W2294177855 @default.
• W3217367055 cites W2311203695 @default.
• W3217367055 cites W2321052603 @default.
• W3217367055 cites W2331622879 @default.
• W3217367055 cites W2345791363 @default.
• W3217367055 cites W2409288333 @default.
• W3217367055 cites W2463195069 @default.
• W3217367055 cites W2465423486 @default.
• W3217367055 cites W2551484684 @default.
• W3217367055 cites W2622729143 @default.
• W3217367055 cites W2725186976 @default.
• W3217367055 cites W2778676096 @default.
• W3217367055 cites W2791647573 @default.
• W3217367055 cites W2809673707 @default.
• W3217367055 cites W2834343320 @default.
• W3217367055 cites W2901596277 @default.
• W3217367055 cites W2905495236 @default.
• W3217367055 cites W2922383680 @default.
• W3217367055 cites W2938451858 @default.
• W3217367055 cites W2942829220 @default.
• W3217367055 cites W2946475657 @default.
• W3217367055 cites W2951563276 @default.
• W3217367055 cites W2966358334 @default.
• W3217367055 cites W2979730937 @default.
• W3217367055 cites W2980846045 @default.
• W3217367055 cites W2989154634 @default.

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