FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4200106899> ?p ?o ?g. }

• W4200106899 endingPage "106401" @default.
• W4200106899 startingPage "106401" @default.
• W4200106899 abstract "Cometabolic oxidation involves the oxidation of chemicals often by monooxygenases or dioxygenases and can be a removal process for environmental contaminants such as trichloroethene (TCE) or 1,4-dioxane. Information on the occurrence of these genes and their associated microorganisms in environmental samples has the potential to enhance our understanding of contaminant removal. The overall aims were to 1) ascertain which genes encoding for monooxygenases (from methanotrophs, ammonia oxidizing bacteria and toluene/phenol oxidizers) and other key enzymes are present in soil microcosms and 2) determine which phylotypes are associated with those genes. The approach involved a predictive tool called PICRUSt2 and 16S rRNA gene amplicon datasets from two previous soil microcosm studies. The following targets from the KEGG database were examined: pmo/amo, mmo, dmp/pox/tomA, tmo/tbu/tou, bssABC (and downstream genes), tod, xylM, xylA, gst, dhaA, catE, dbfA1, dbfA2 and phenol 2-monooxygenase. A large number of phylotypes were associated with pmo/amo, while mmo was linked to only five. Several phylotypes were associated with both pmo/amo and mmo. The most dominant microorganism predicted for mmoX was Mycobacterium (also predicted for pmo/amo). A large number of phylotypes were associated with all six genes from the dmp/pox/tomA KEGG group. The taxonomic associations predicted for the tmo/tbu/tou KEGG group were more limited. In both datasets, Geobacter was a key phylotype for benzylsuccinate synthase. The dioxygenase-mediated toluene degradation pathway encoded by todC1C2BA was largely absent, as were the genes (xylM, xylA) encoding for xylene monooxygenase. All other genes investigated were predicted to be present and were associated with a number of microorganisms. Overall, the analysis predicted the genes encoding for sMMO (mmo), T3MO/T3MO/ToMO (tmo/tbu/tou) and benzylsuccinate synthase (bssABC) are present for a limited number of phylotypes compared to those encoding for pMMO/AMO (pmo/amo) and phenol monooxygenase/T2MO (dmp/poxA/tomA). These findings suggest in soils contaminant removal via pMMO/AMO or phenol monooxygenase/T2MO may be common because of the occurrence of these enzymes with a large number of phylotypes." @default.
• W4200106899 created "2021-12-31" @default.
• W4200106899 creator A5039830193 @default.
• W4200106899 creator A5048631117 @default.
• W4200106899 date "2022-02-01" @default.
• W4200106899 modified "2023-09-23" @default.
• W4200106899 title "Predicting the occurrence of monooxygenases and their associated phylotypes in soil microcosms" @default.
• W4200106899 cites W1499310995 @default.
• W4200106899 cites W1501880916 @default.
• W4200106899 cites W1530879838 @default.
• W4200106899 cites W1532577477 @default.
• W4200106899 cites W1533035790 @default.
• W4200106899 cites W1537424336 @default.
• W4200106899 cites W1540974485 @default.
• W4200106899 cites W1578715567 @default.
• W4200106899 cites W1582454623 @default.
• W4200106899 cites W1606550835 @default.
• W4200106899 cites W1731335188 @default.
• W4200106899 cites W1749827946 @default.
• W4200106899 cites W1765708425 @default.
• W4200106899 cites W1882603223 @default.
• W4200106899 cites W1900269939 @default.
• W4200106899 cites W1906612725 @default.
• W4200106899 cites W1942805917 @default.
• W4200106899 cites W1948385126 @default.
• W4200106899 cites W1963987421 @default.
• W4200106899 cites W1995847793 @default.
• W4200106899 cites W2006337236 @default.
• W4200106899 cites W2010182795 @default.
• W4200106899 cites W2013195783 @default.
• W4200106899 cites W2018858141 @default.
• W4200106899 cites W2023843733 @default.
• W4200106899 cites W2031346742 @default.
• W4200106899 cites W2036993662 @default.
• W4200106899 cites W2039823965 @default.
• W4200106899 cites W2045631373 @default.
• W4200106899 cites W2056279562 @default.
• W4200106899 cites W2056713397 @default.
• W4200106899 cites W2064929294 @default.
• W4200106899 cites W2066795141 @default.
• W4200106899 cites W2067856736 @default.
• W4200106899 cites W2074840444 @default.
• W4200106899 cites W2074995363 @default.
• W4200106899 cites W2077631777 @default.
• W4200106899 cites W2091922579 @default.
• W4200106899 cites W2093131016 @default.
• W4200106899 cites W2093249405 @default.
• W4200106899 cites W2097198628 @default.
• W4200106899 cites W2097822387 @default.
• W4200106899 cites W2100123056 @default.
• W4200106899 cites W2100571971 @default.
• W4200106899 cites W2101475536 @default.
• W4200106899 cites W2107940314 @default.
• W4200106899 cites W2111023541 @default.
• W4200106899 cites W2117457769 @default.
• W4200106899 cites W2123870929 @default.
• W4200106899 cites W2127527429 @default.
• W4200106899 cites W2129145999 @default.
• W4200106899 cites W2131976155 @default.
• W4200106899 cites W2140826215 @default.
• W4200106899 cites W2141142922 @default.
• W4200106899 cites W2142182392 @default.
• W4200106899 cites W2143337934 @default.
• W4200106899 cites W2144904559 @default.
• W4200106899 cites W2146238914 @default.
• W4200106899 cites W2149820431 @default.
• W4200106899 cites W2151230130 @default.
• W4200106899 cites W2152339525 @default.
• W4200106899 cites W2156068910 @default.
• W4200106899 cites W2156700399 @default.
• W4200106899 cites W2157030986 @default.
• W4200106899 cites W2159420793 @default.
• W4200106899 cites W2161389957 @default.
• W4200106899 cites W2161648015 @default.
• W4200106899 cites W2162252733 @default.
• W4200106899 cites W2163483120 @default.
• W4200106899 cites W2168275238 @default.
• W4200106899 cites W2168426122 @default.
• W4200106899 cites W2169115487 @default.
• W4200106899 cites W2169412206 @default.
• W4200106899 cites W2171296011 @default.
• W4200106899 cites W2172291065 @default.
• W4200106899 cites W2232910254 @default.
• W4200106899 cites W2421098416 @default.
• W4200106899 cites W2518088849 @default.
• W4200106899 cites W260091221 @default.
• W4200106899 cites W2604110005 @default.
• W4200106899 cites W2766641567 @default.
• W4200106899 cites W2807116752 @default.
• W4200106899 cites W2899725711 @default.
• W4200106899 cites W2939938317 @default.
• W4200106899 cites W2945375429 @default.
• W4200106899 cites W2951358594 @default.
• W4200106899 cites W2977731503 @default.
• W4200106899 cites W2990427812 @default.
• W4200106899 cites W3005432368 @default.
• W4200106899 cites W3030441098 @default.
• W4200106899 cites W3037904660 @default.

• next