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- W4200413654 abstract "Accumulated evidence has shown that CDS introns (CIs) play important roles in regulating gene expression. However, research on UTR introns (UIs) is limited. In this study, UIs (including 5′UTR and 3′UTR introns (5UIs and 3UIs)) were identified from the Atalantia buxifolia genome. The length and nucleotide distribution characteristics of both 5UIs and 3UIs and the distributions of cis-acting elements and transcription factor binding sites (TFBSs) in 5UIs were investigated. Moreover, PageMan enrichment analysis was applied to show the possible roles of transcripts containing UIs (UI-Ts). In total, 1077 5UIs and 866 3UIs were identified from 897 5UI-Ts and 670 3UI-Ts, respectively. Among them, 765 (85.28%) 5UI-Ts and 527 (78.66%) 3UI-Ts contained only one UI, and 94 (6.38%) UI-Ts contained both 5UI and 3UI. The UI density was lower than that of CDS introns, but their mean and median intron sizes were ~2 times those of the CDS introns. The A. buxifolia 5UIs were rich in gene-expression-enhancement-related elements and contained many TFBSs for BBR-BPC, MIKC_MADS, AP2 and Dof TFs, indicating that 5UIs play a role in regulating or enhancing the expression of downstream genes. Enrichment analysis revealed that UI-Ts involved in ‘not assigned’ and ‘RNA’ pathways were significantly enriched. Noteworthily, 119 (85.61%) of the 3UI-Ts were genes encoding pentatricopeptide (PPR) repeat-containing proteins. These results will be helpful for the future study of the regulatory roles of UIs in A. buxifolia." @default.
- W4200413654 created "2021-12-31" @default.
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- W4200413654 creator A5066312792 @default.
- W4200413654 date "2021-12-07" @default.
- W4200413654 modified "2023-10-18" @default.
- W4200413654 title "Genome-Scale Computational Identification and Characterization of UTR Introns in Atalantia buxifolia" @default.
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- W4200413654 cites W1767163685 @default.
- W4200413654 cites W1971229919 @default.
- W4200413654 cites W1974434328 @default.
- W4200413654 cites W1976857400 @default.
- W4200413654 cites W1978929679 @default.
- W4200413654 cites W1981018171 @default.
- W4200413654 cites W1981218311 @default.
- W4200413654 cites W1983555686 @default.
- W4200413654 cites W1986541791 @default.
- W4200413654 cites W1986662234 @default.
- W4200413654 cites W1986717620 @default.
- W4200413654 cites W1986998800 @default.
- W4200413654 cites W1988793069 @default.
- W4200413654 cites W1991210664 @default.
- W4200413654 cites W1992420395 @default.
- W4200413654 cites W1995252117 @default.
- W4200413654 cites W2005416777 @default.
- W4200413654 cites W2012627860 @default.
- W4200413654 cites W2012709143 @default.
- W4200413654 cites W2013277487 @default.
- W4200413654 cites W2017861498 @default.
- W4200413654 cites W2018819004 @default.
- W4200413654 cites W2026258495 @default.
- W4200413654 cites W2035908878 @default.
- W4200413654 cites W2042392223 @default.
- W4200413654 cites W2042630896 @default.
- W4200413654 cites W2043550667 @default.
- W4200413654 cites W2048046638 @default.
- W4200413654 cites W2052294434 @default.
- W4200413654 cites W2058809417 @default.
- W4200413654 cites W2060580072 @default.
- W4200413654 cites W2064036807 @default.
- W4200413654 cites W2068009492 @default.
- W4200413654 cites W2069696438 @default.
- W4200413654 cites W2074330027 @default.
- W4200413654 cites W2083445344 @default.
- W4200413654 cites W2086013109 @default.
- W4200413654 cites W2087424704 @default.
- W4200413654 cites W2088357750 @default.
- W4200413654 cites W2093346388 @default.
- W4200413654 cites W2097558013 @default.
- W4200413654 cites W2101543197 @default.
- W4200413654 cites W2108876548 @default.
- W4200413654 cites W2109977436 @default.
- W4200413654 cites W2113180960 @default.
- W4200413654 cites W2114280998 @default.
- W4200413654 cites W2114656820 @default.
- W4200413654 cites W2115744888 @default.
- W4200413654 cites W2123502134 @default.
- W4200413654 cites W2123921145 @default.
- W4200413654 cites W2124338167 @default.
- W4200413654 cites W2130685695 @default.
- W4200413654 cites W2132835355 @default.
- W4200413654 cites W2134586803 @default.
- W4200413654 cites W2136942244 @default.
- W4200413654 cites W2136965788 @default.
- W4200413654 cites W2138704811 @default.
- W4200413654 cites W2141824139 @default.
- W4200413654 cites W2143350291 @default.
- W4200413654 cites W2144719322 @default.
- W4200413654 cites W2144941304 @default.
- W4200413654 cites W2150895319 @default.
- W4200413654 cites W2153526924 @default.
- W4200413654 cites W2154036274 @default.
- W4200413654 cites W2157338021 @default.
- W4200413654 cites W2158266834 @default.
- W4200413654 cites W2168658196 @default.
- W4200413654 cites W2217624447 @default.
- W4200413654 cites W2468554831 @default.
- W4200413654 cites W2568479992 @default.
- W4200413654 cites W2569391057 @default.
- W4200413654 cites W2776906103 @default.
- W4200413654 cites W2805882336 @default.
- W4200413654 cites W2828832568 @default.
- W4200413654 cites W2947012636 @default.
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- W4200413654 doi "https://doi.org/10.3390/horticulturae7120556" @default.
- W4200413654 hasPublicationYear "2021" @default.
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