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- W4205137427 abstract "Abstract Fluorophores play crucial roles in chemical and biological imaging. An efficient computational model that evaluates the electronic properties of molecules accurately would be a useful tool for discovering novel fluorophores. Tree‐based ensemble and graph neural network (GNN) methods have been regarded as attractive models for predicting molecular properties. Here, we present a benchmark test using three tree‐based ensemble methods (Random Forest, LightGBM, and XGBoost) and three GNNs (directed message passing neural network [D‐MPNN], attention message passing neural network [AMPNN], and DimeNet++) for predicting electronic transition properties such as excitation energies and oscillator strengths. From our benchmark, DimeNet++ was identified as the most accurate model to predict electronic transition properties. The average root mean square error of DimeNet++ for predicting the HOMO–LUMO gap was 0.11 eV whereas those of the other methods exceeded 0.3 eV. D‐MPNN predicted fastest without sacrificing accuracy. Our results show that DimeNet++ and D‐MPNN may serve as helpful evaluators for novel fluorophore design when combined with molecular generation methods." @default.
- W4205137427 created "2022-01-26" @default.
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- W4205137427 date "2022-01-10" @default.
- W4205137427 modified "2023-10-15" @default.
- W4205137427 title "A benchmark study of machine learning methods for molecular electronic transition: Tree‐based ensemble learning versus graph neural network" @default.
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- W4205137427 doi "https://doi.org/10.1002/bkcs.12468" @default.
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