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- W4220753444 abstract "Abstract Summary Analysis of intra and extra cellular dynamic like vesicles transport involves particle tracking algorithms. Designing a particle tracking pipeline is a routine but tedious task. Therefore, particle dynamics analysis is often performed by combining several pieces of software (filtering, detection, tracking…) requiring a lot of manual operations, and therefore leading to poorly reproducible results. A good synergy between particle detector with a tracker is of paramount importance. In addition, a user-friendly interface to control the quality of estimated trajectories is necessary. To address these issues, we developed STracking a python library that allows to combine algorithms into standardized particle tracking pipelines. Availability and Implementation STracking is available as a python library using “pip install” and the source code is publicly available on GitHub ( https://github.com/sylvainprigent/stracking ). A graphical interface is available using two napari plugins: napari-stracking and napari-tracks-reader . These napari plugins can be installed via the napari plugins menu or using “pip install”. The napari plugin source codes are available on GitHub ( https://github.com/sylvainprigent/napari-tracks-reader , https://github.com/sylvainprigent/napari-stracking ). Contact sylvain.prigent@inria.fr , cesar-augusto.valades-cruz@curie.fr" @default.
- W4220753444 created "2022-04-03" @default.
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- W4220753444 date "2022-03-13" @default.
- W4220753444 modified "2023-09-30" @default.
- W4220753444 title "STracking: a free and open-source python library for particle tracking and analysis" @default.
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- W4220753444 doi "https://doi.org/10.1101/2022.03.10.483766" @default.
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