FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4229005683> ?p ?o ?g. }

• W4229005683 endingPage "111342" @default.
• W4229005683 startingPage "111342" @default.
• W4229005683 abstract "Antibiotic resistance genes (ARGs) have been identified in viral DNA isolated from different kinds of food, but little is known about their origin. In this study, twenty-one viromes were analyzed from samples of food previously reported to carry ARGs, including meat (poultry, veal, and pork), fish (Mediterranean, Atlantic, frozen, farmed and shellfish) and vegetables (lettuce, cucumber, and spinach). Classification of the contigs by Kraken revealed a large percentage of unclassified contigs (43.7–98.2%) in all the viromes. Only 0.05–7.1% of the contigs were identified as viral and of these, more than 91% belonged to different bacteriophage families, Podophages and Siphophages being the most prevalent. According to VirSorter, the largest number of viral contigs were derived from viromes of shellfish, followed by spinach. Spinach viromes also included the largest number of phage sequences identified by PHASTER. The abundant presence of bacterial genes in the viromes, including 16S rRNA genes, was attributed to the phage packaging of the bacterial genome fragments, as no bacterial DNA was found outside the viral capsids. The detection of 16S rRNA genes in the different viromes allowed diverse phage bacterial hosts to be identified. The three major functional groups of genes determined were related to metabolism, detoxification/resistance, and above all, biosynthesis. Various ARGs were quantified in the viromes by qPCR, the most prevalent being β-lactamases, particularly blaTEM. Analysis of ARG diversity in the viromes by Prokka and CARD revealed various resistance-related genes, whereas a more restrictive search by ResFinder identified blaTEM in all the food viromes, blaOXA in Atlantic fish-1 and spinach-2, oqxB in lettuce-1, and dfr in spinach-2. The presence of ARGs in the food viromes points to bacterial DNA mobilization by transduction mechanisms. Transduction of resistances by phage particles may therefore contribute to the emergence of resistant strains along the food chain and should be monitored." @default.
• W4229005683 created "2022-05-08" @default.
• W4229005683 creator A5008672240 @default.
• W4229005683 creator A5035219735 @default.
• W4229005683 creator A5038037908 @default.
• W4229005683 creator A5066076444 @default.
• W4229005683 creator A5074700446 @default.
• W4229005683 creator A5082432301 @default.
• W4229005683 date "2022-06-01" @default.
• W4229005683 modified "2023-09-26" @default.
• W4229005683 title "Prevalence of bacterial genes in the phage fraction of food viromes" @default.
• W4229005683 cites W1742318679 @default.
• W4229005683 cites W1965818063 @default.
• W4229005683 cites W1988925586 @default.
• W4229005683 cites W2000400918 @default.
• W4229005683 cites W2000898667 @default.
• W4229005683 cites W2003162236 @default.
• W4229005683 cites W2008088946 @default.
• W4229005683 cites W2012696020 @default.
• W4229005683 cites W2036379546 @default.
• W4229005683 cites W2055101979 @default.
• W4229005683 cites W2057285125 @default.
• W4229005683 cites W2077631777 @default.
• W4229005683 cites W2081319466 @default.
• W4229005683 cites W2096093282 @default.
• W4229005683 cites W2099837668 @default.
• W4229005683 cites W2111938399 @default.
• W4229005683 cites W2112098552 @default.
• W4229005683 cites W2113172269 @default.
• W4229005683 cites W2117357485 @default.
• W4229005683 cites W2119859604 @default.
• W4229005683 cites W2121557733 @default.
• W4229005683 cites W2130764575 @default.
• W4229005683 cites W2131186249 @default.
• W4229005683 cites W2131781913 @default.
• W4229005683 cites W2134852597 @default.
• W4229005683 cites W2141637710 @default.
• W4229005683 cites W2148630429 @default.
• W4229005683 cites W2159954944 @default.
• W4229005683 cites W2161251845 @default.
• W4229005683 cites W2161762698 @default.
• W4229005683 cites W2165524029 @default.
• W4229005683 cites W2166108240 @default.
• W4229005683 cites W2253557845 @default.
• W4229005683 cites W2408483783 @default.
• W4229005683 cites W2409422467 @default.
• W4229005683 cites W2467114126 @default.
• W4229005683 cites W2508337372 @default.
• W4229005683 cites W2521169042 @default.
• W4229005683 cites W2557121075 @default.
• W4229005683 cites W2560597660 @default.
• W4229005683 cites W2579416926 @default.
• W4229005683 cites W2599417231 @default.
• W4229005683 cites W2605018235 @default.
• W4229005683 cites W2612302775 @default.
• W4229005683 cites W2742945478 @default.
• W4229005683 cites W2758894305 @default.
• W4229005683 cites W2791956910 @default.
• W4229005683 cites W2794007526 @default.
• W4229005683 cites W2810844202 @default.
• W4229005683 cites W2892679831 @default.
• W4229005683 cites W2896215637 @default.
• W4229005683 cites W2901578498 @default.
• W4229005683 cites W2910880995 @default.
• W4229005683 cites W2949741751 @default.
• W4229005683 cites W2951852653 @default.
• W4229005683 cites W2952424816 @default.
• W4229005683 cites W2967346752 @default.
• W4229005683 cites W2973862493 @default.
• W4229005683 cites W2977870980 @default.
• W4229005683 cites W2989960782 @default.
• W4229005683 cites W3002115760 @default.
• W4229005683 cites W3007907023 @default.
• W4229005683 cites W3013271851 @default.
• W4229005683 cites W3017058581 @default.
• W4229005683 cites W3037059662 @default.
• W4229005683 cites W3045508279 @default.
• W4229005683 cites W3049038269 @default.
• W4229005683 cites W3081166727 @default.
• W4229005683 cites W3081228445 @default.
• W4229005683 cites W3114692706 @default.
• W4229005683 cites W3117801741 @default.
• W4229005683 cites W3121998763 @default.
• W4229005683 cites W3133697007 @default.
• W4229005683 cites W3162053347 @default.
• W4229005683 cites W3166583009 @default.
• W4229005683 cites W3186335267 @default.
• W4229005683 cites W3211652929 @default.
• W4229005683 cites W3212409958 @default.
• W4229005683 doi "https://doi.org/10.1016/j.foodres.2022.111342" @default.
• W4229005683 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/35651089" @default.
• W4229005683 hasPublicationYear "2022" @default.
• W4229005683 type Work @default.
• W4229005683 citedByCount "2" @default.
• W4229005683 countsByYear W42290056832022 @default.
• W4229005683 countsByYear W42290056832023 @default.
• W4229005683 crossrefType "journal-article" @default.
• W4229005683 hasAuthorship W4229005683A5008672240 @default.

• next