FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4236067110> ?p ?o ?g. }

• W4236067110 abstract "Abstract Background Advances in next-generation sequencing technologies have reduced the cost of whole transcriptome analyses, allowing characterization of non-model species at unprecedented levels. The rapid pace of transcriptomic sequencing has driven the public accumulation of a wealth of data for phylogenomic analyses, however lack of tools aimed towards phylogeneticists to efficiently identify orthologous sequences currently hinders effective harnessing of this resource. Results We introduce TOAST, an open source R software package that can utilize the ortholog searches based on the software Benchmarking Universal Single-Copy Orthologs (BUSCO) to assemble multiple sequence alignments of orthologous loci from transcriptomes for any group of organisms. By streamlining search, query, and alignment, TOAST automates the generation of locus and concatenated alignments, and also presents a series of outputs from which users can not only explore missing data patterns across their alignments, but also reassemble alignments based on user-defined acceptable missing data levels for a given research question. Conclusions TOAST provides a comprehensive set of tools for assembly of sequence alignments of orthologs for comparative transcriptomic and phylogenomic studies. This software empowers easy assembly of public and novel sequences for any target database of candidate orthologs, and fills a critically needed niche for tools that enable quantification and testing of the impact of missing data. As open-source software, TOAST is fully customizable for integration into existing or novel custom informatic pipelines for phylogenomic inference." @default.
• W4236067110 created "2022-05-12" @default.
• W4236067110 creator A5002799814 @default.
• W4236067110 creator A5007075789 @default.
• W4236067110 creator A5047104748 @default.
• W4236067110 creator A5072545022 @default.
• W4236067110 date "2020-03-12" @default.
• W4236067110 modified "2023-10-16" @default.
• W4236067110 title "Transcriptome Ortholog Alignment Sequence Tools (TOAST) for Phylogenomic Dataset Assembly" @default.
• W4236067110 cites W1791523997 @default.
• W4236067110 cites W1961824641 @default.
• W4236067110 cites W1971498016 @default.
• W4236067110 cites W2003267577 @default.
• W4236067110 cites W2022122623 @default.
• W4236067110 cites W2027655271 @default.
• W4236067110 cites W2038184529 @default.
• W4236067110 cites W2041467153 @default.
• W4236067110 cites W2047310094 @default.
• W4236067110 cites W2047405437 @default.
• W4236067110 cites W2055655674 @default.
• W4236067110 cites W2066289589 @default.
• W4236067110 cites W2081778808 @default.
• W4236067110 cites W2095523744 @default.
• W4236067110 cites W2103017472 @default.
• W4236067110 cites W2107903949 @default.
• W4236067110 cites W2110912320 @default.
• W4236067110 cites W2111647009 @default.
• W4236067110 cites W2116868014 @default.
• W4236067110 cites W2127495923 @default.
• W4236067110 cites W2127774996 @default.
• W4236067110 cites W2128841447 @default.
• W4236067110 cites W2138255346 @default.
• W4236067110 cites W2148929479 @default.
• W4236067110 cites W2155628349 @default.
• W4236067110 cites W2162210817 @default.
• W4236067110 cites W2163273794 @default.
• W4236067110 cites W2179097619 @default.
• W4236067110 cites W2296550515 @default.
• W4236067110 cites W2325017372 @default.
• W4236067110 cites W2331966709 @default.
• W4236067110 cites W2407523666 @default.
• W4236067110 cites W2482639080 @default.
• W4236067110 cites W2558419142 @default.
• W4236067110 cites W2572647583 @default.
• W4236067110 cites W2594095179 @default.
• W4236067110 cites W2594557998 @default.
• W4236067110 cites W2727370449 @default.
• W4236067110 cites W2748000776 @default.
• W4236067110 cites W2749613778 @default.
• W4236067110 cites W2761253405 @default.
• W4236067110 cites W2767561368 @default.
• W4236067110 cites W2771510130 @default.
• W4236067110 cites W2803572653 @default.
• W4236067110 cites W2945934429 @default.
• W4236067110 cites W2950022062 @default.
• W4236067110 cites W2950595506 @default.
• W4236067110 cites W2951257985 @default.
• W4236067110 cites W2952148836 @default.
• W4236067110 cites W2952615074 @default.
• W4236067110 cites W2988408576 @default.
• W4236067110 doi "https://doi.org/10.21203/rs.2.16269/v4" @default.
• W4236067110 hasPublicationYear "2020" @default.
• W4236067110 type Work @default.
• W4236067110 citedByCount "0" @default.
• W4236067110 crossrefType "posted-content" @default.
• W4236067110 hasAuthorship W4236067110A5002799814 @default.
• W4236067110 hasAuthorship W4236067110A5007075789 @default.
• W4236067110 hasAuthorship W4236067110A5047104748 @default.
• W4236067110 hasAuthorship W4236067110A5072545022 @default.
• W4236067110 hasBestOaLocation W42360671101 @default.
• W4236067110 hasConcept C104317684 @default.
• W4236067110 hasConcept C124101348 @default.
• W4236067110 hasConcept C144133560 @default.
• W4236067110 hasConcept C150194340 @default.
• W4236067110 hasConcept C154945302 @default.
• W4236067110 hasConcept C162317418 @default.
• W4236067110 hasConcept C162853370 @default.
• W4236067110 hasConcept C193252679 @default.
• W4236067110 hasConcept C199360897 @default.
• W4236067110 hasConcept C2776214188 @default.
• W4236067110 hasConcept C2777904410 @default.
• W4236067110 hasConcept C2778112365 @default.
• W4236067110 hasConcept C41008148 @default.
• W4236067110 hasConcept C44465124 @default.
• W4236067110 hasConcept C54355233 @default.
• W4236067110 hasConcept C70343354 @default.
• W4236067110 hasConcept C70721500 @default.
• W4236067110 hasConcept C86251818 @default.
• W4236067110 hasConcept C86803240 @default.
• W4236067110 hasConceptScore W4236067110C104317684 @default.
• W4236067110 hasConceptScore W4236067110C124101348 @default.
• W4236067110 hasConceptScore W4236067110C144133560 @default.
• W4236067110 hasConceptScore W4236067110C150194340 @default.
• W4236067110 hasConceptScore W4236067110C154945302 @default.
• W4236067110 hasConceptScore W4236067110C162317418 @default.
• W4236067110 hasConceptScore W4236067110C162853370 @default.
• W4236067110 hasConceptScore W4236067110C193252679 @default.
• W4236067110 hasConceptScore W4236067110C199360897 @default.
• W4236067110 hasConceptScore W4236067110C2776214188 @default.
• W4236067110 hasConceptScore W4236067110C2777904410 @default.

• next