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- W4241569124 abstract "In the next generation sequencing (NGS) read alignment problem, millions of deoxyribonucleic acid (DNA) fragments, called reads, are mapped to a reference genome. Read alignment is typically carried out using traditional computing platforms, which have become a limiting factor in the speed of the process. The massive scale of the problem makes it an attractive target for acceleration. In this paper, we design a read alignment algorithm designed to run on a heterogeneous system composed of a graphics processing unity (GPU) and a multicore central processing unit (CPU). We introduce novel techniques for the alignment process and construct a computational pipeline of overlapped CPU and GPU stages. We compare our tool with the BWA-mem alignment tool, and the results show substantial speedups." @default.
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- W4241569124 date "2018-01-01" @default.
- W4241569124 modified "2023-09-26" @default.
- W4241569124 title "A GPU-CPU heterogeneous algorithm for NGS read alignment" @default.
- W4241569124 doi "https://doi.org/10.1504/ijcbdd.2018.090840" @default.
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