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• W4243363028 abstract "<ns4:p>Assignment of cell types from single-cell RNA sequencing (scRNA-seq) data remains a time-consuming and error-prone process. Current packages for identity assignment use limited types of reference data and often have rigid data structure requirements. We developed the clustifyr R package to leverage several external data types, including gene expression profiles to assign likely cell types using data from scRNA-seq, bulk RNA-seq, microarray expression data, or signature gene lists. We benchmark various parameters of a correlation-based approach and implement gene list enrichment methods. clustifyr is a lightweight and effective cell-type assignment tool developed for compatibility with various scRNA-seq analysis workflows. clustifyr is publicly available at <ns4:ext-link xmlns:ns3=http://www.w3.org/1999/xlink ext-link-type=uri ns3:href=https://github.com/rnabioco/clustifyR>https://github.com/rnabioco/clustifyr</ns4:ext-link></ns4:p>" @default.
• W4243363028 created "2022-05-12" @default.
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• W4243363028 date "2020-04-01" @default.
• W4243363028 modified "2023-09-25" @default.
• W4243363028 title "clustifyr: an R package for automated single-cell RNA sequencing cluster classification" @default.
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• W4243363028 doi "https://doi.org/10.12688/f1000research.22969.1" @default.
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