FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4247950422> ?p ?o ?g. }

• W4247950422 endingPage "D541" @default.
• W4247950422 startingPage "D535" @default.
• W4247950422 abstract "Microbial functional diversification is driven by environmental factors, i.e. microorganisms inhabiting the same environmental niche tend to be more functionally similar than those from different environments. In some cases, even closely phylogenetically related microbes differ more across environments than across taxa. While microbial similarities are often reported in terms of taxonomic relationships, no existing databases directly link microbial functions to the environment. We previously developed a method for comparing microbial functional similarities on the basis of proteins translated from their sequenced genomes. Here, we describe fusionDB, a novel database that uses our functional data to represent 1374 taxonomically distinct bacteria annotated with available metadata: habitat/niche, preferred temperature, and oxygen use. Each microbe is encoded as a set of functions represented by its proteome and individual microbes are connected via common functions. Users can search fusionDB via combinations of organism names and metadata. Moreover, the web interface allows mapping new microbial genomes to the functional spectrum of reference bacteria, rendering interactive similarity networks that highlight shared functionality. fusionDB provides a fast means of comparing microbes, identifying potential horizontal gene transfer events, and highlighting key environment-specific functionality." @default.
• W4247950422 created "2022-05-12" @default.
• W4247950422 creator A5032442952 @default.
• W4247950422 creator A5069971220 @default.
• W4247950422 creator A5089912529 @default.
• W4247950422 creator A5090706824 @default.
• W4247950422 date "2017-11-03" @default.
• W4247950422 modified "2023-10-01" @default.
• W4247950422 title "fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks" @default.
• W4247950422 cites W1111946748 @default.
• W4247950422 cites W1692744135 @default.
• W4247950422 cites W1710186000 @default.
• W4247950422 cites W1990240633 @default.
• W4247950422 cites W1991402127 @default.
• W4247950422 cites W2004548026 @default.
• W4247950422 cites W2014513938 @default.
• W4247950422 cites W2027831845 @default.
• W4247950422 cites W2046594601 @default.
• W4247950422 cites W2055043387 @default.
• W4247950422 cites W2081716616 @default.
• W4247950422 cites W2096525273 @default.
• W4247950422 cites W2111373249 @default.
• W4247950422 cites W2115595474 @default.
• W4247950422 cites W2130956021 @default.
• W4247950422 cites W2155606054 @default.
• W4247950422 cites W2160378127 @default.
• W4247950422 cites W2224056471 @default.
• W4247950422 cites W2329416458 @default.
• W4247950422 cites W4212865600 @default.
• W4247950422 cites W4231897523 @default.
• W4247950422 cites W4250297812 @default.
• W4247950422 cites W4255375128 @default.
• W4247950422 doi "https://doi.org/10.1093/nar/gkx1060" @default.
• W4247950422 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/29112720" @default.
• W4247950422 hasPublicationYear "2017" @default.
• W4247950422 type Work @default.
• W4247950422 citedByCount "19" @default.
• W4247950422 countsByYear W42479504222017 @default.
• W4247950422 countsByYear W42479504222018 @default.
• W4247950422 countsByYear W42479504222019 @default.
• W4247950422 countsByYear W42479504222020 @default.
• W4247950422 countsByYear W42479504222021 @default.
• W4247950422 countsByYear W42479504222022 @default.
• W4247950422 countsByYear W42479504222023 @default.
• W4247950422 crossrefType "journal-article" @default.
• W4247950422 hasAuthorship W4247950422A5032442952 @default.
• W4247950422 hasAuthorship W4247950422A5069971220 @default.
• W4247950422 hasAuthorship W4247950422A5089912529 @default.
• W4247950422 hasAuthorship W4247950422A5090706824 @default.
• W4247950422 hasBestOaLocation W42479504221 @default.
• W4247950422 hasConcept C104317684 @default.
• W4247950422 hasConcept C104397665 @default.
• W4247950422 hasConcept C111919701 @default.
• W4247950422 hasConcept C137858568 @default.
• W4247950422 hasConcept C141231307 @default.
• W4247950422 hasConcept C15151743 @default.
• W4247950422 hasConcept C153991713 @default.
• W4247950422 hasConcept C188880781 @default.
• W4247950422 hasConcept C18903297 @default.
• W4247950422 hasConcept C41008148 @default.
• W4247950422 hasConcept C523546767 @default.
• W4247950422 hasConcept C54355233 @default.
• W4247950422 hasConcept C60644358 @default.
• W4247950422 hasConcept C69562835 @default.
• W4247950422 hasConcept C70721500 @default.
• W4247950422 hasConcept C78458016 @default.
• W4247950422 hasConcept C86803240 @default.
• W4247950422 hasConcept C93518851 @default.
• W4247950422 hasConceptScore W4247950422C104317684 @default.
• W4247950422 hasConceptScore W4247950422C104397665 @default.
• W4247950422 hasConceptScore W4247950422C111919701 @default.
• W4247950422 hasConceptScore W4247950422C137858568 @default.
• W4247950422 hasConceptScore W4247950422C141231307 @default.
• W4247950422 hasConceptScore W4247950422C15151743 @default.
• W4247950422 hasConceptScore W4247950422C153991713 @default.
• W4247950422 hasConceptScore W4247950422C188880781 @default.
• W4247950422 hasConceptScore W4247950422C18903297 @default.
• W4247950422 hasConceptScore W4247950422C41008148 @default.
• W4247950422 hasConceptScore W4247950422C523546767 @default.
• W4247950422 hasConceptScore W4247950422C54355233 @default.
• W4247950422 hasConceptScore W4247950422C60644358 @default.
• W4247950422 hasConceptScore W4247950422C69562835 @default.
• W4247950422 hasConceptScore W4247950422C70721500 @default.
• W4247950422 hasConceptScore W4247950422C78458016 @default.
• W4247950422 hasConceptScore W4247950422C86803240 @default.
• W4247950422 hasConceptScore W4247950422C93518851 @default.
• W4247950422 hasIssue "D1" @default.
• W4247950422 hasLocation W42479504221 @default.
• W4247950422 hasLocation W42479504222 @default.
• W4247950422 hasLocation W42479504223 @default.
• W4247950422 hasLocation W42479504224 @default.
• W4247950422 hasLocation W42479504225 @default.
• W4247950422 hasLocation W42479504226 @default.
• W4247950422 hasLocation W42479504227 @default.
• W4247950422 hasOpenAccess W4247950422 @default.
• W4247950422 hasPrimaryLocation W42479504221 @default.
• W4247950422 hasRelatedWork W1531420823 @default.
• W4247950422 hasRelatedWork W1994927702 @default.

• next