Matches in SemOpenAlex for { <https://semopenalex.org/work/W4249437475> ?p ?o ?g. }
- W4249437475 endingPage "952" @default.
- W4249437475 startingPage "952" @default.
- W4249437475 abstract "<ns4:p>Detection of differential transcript usage (DTU) from RNA-seq data is an important bioinformatic analysis that complements differential gene expression analysis. Here we present a simple workflow using a set of existing R/Bioconductor packages for analysis of DTU. We show how these packages can be used downstream of RNA-seq quantification using the Salmon software package. The entire pipeline is fast, benefiting from inference steps by Salmon to quantify expression at the transcript level. The workflow includes live, runnable code chunks for analysis using DRIMSeq and DEXSeq, as well as for performing two-stage testing of DTU using the stageR package, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU. We evaluate these packages and other related packages on a simulated dataset with parameters estimated from real data.</ns4:p>" @default.
- W4249437475 created "2022-05-12" @default.
- W4249437475 creator A5008885844 @default.
- W4249437475 creator A5014584023 @default.
- W4249437475 creator A5049770701 @default.
- W4249437475 date "2018-09-14" @default.
- W4249437475 modified "2023-10-15" @default.
- W4249437475 title "Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification" @default.
- W4249437475 cites W1490261451 @default.
- W4249437475 cites W1897931464 @default.
- W4249437475 cites W1973094248 @default.
- W4249437475 cites W1999574084 @default.
- W4249437475 cites W2025943989 @default.
- W4249437475 cites W2065128082 @default.
- W4249437475 cites W2081098333 @default.
- W4249437475 cites W2098734857 @default.
- W4249437475 cites W2110417468 @default.
- W4249437475 cites W2112876600 @default.
- W4249437475 cites W2114104545 @default.
- W4249437475 cites W2119204091 @default.
- W4249437475 cites W2124097252 @default.
- W4249437475 cites W2130116522 @default.
- W4249437475 cites W2137526110 @default.
- W4249437475 cites W2160595026 @default.
- W4249437475 cites W2166820820 @default.
- W4249437475 cites W2179438025 @default.
- W4249437475 cites W2197459998 @default.
- W4249437475 cites W2268486506 @default.
- W4249437475 cites W2318878471 @default.
- W4249437475 cites W2323326409 @default.
- W4249437475 cites W2399707041 @default.
- W4249437475 cites W2413782718 @default.
- W4249437475 cites W2592811885 @default.
- W4249437475 cites W2605897695 @default.
- W4249437475 cites W2606715885 @default.
- W4249437475 cites W2611473020 @default.
- W4249437475 cites W2620721366 @default.
- W4249437475 cites W2624572223 @default.
- W4249437475 cites W2744783701 @default.
- W4249437475 cites W2750771238 @default.
- W4249437475 cites W2761275051 @default.
- W4249437475 cites W2761803678 @default.
- W4249437475 cites W2774883395 @default.
- W4249437475 cites W2775755225 @default.
- W4249437475 cites W2888466250 @default.
- W4249437475 cites W2949317881 @default.
- W4249437475 cites W2953007287 @default.
- W4249437475 cites W4232909036 @default.
- W4249437475 doi "https://doi.org/10.12688/f1000research.15398.2" @default.
- W4249437475 hasPublicationYear "2018" @default.
- W4249437475 type Work @default.
- W4249437475 citedByCount "5" @default.
- W4249437475 countsByYear W42494374752019 @default.
- W4249437475 countsByYear W42494374752020 @default.
- W4249437475 countsByYear W42494374752022 @default.
- W4249437475 countsByYear W42494374752023 @default.
- W4249437475 crossrefType "journal-article" @default.
- W4249437475 hasAuthorship W4249437475A5008885844 @default.
- W4249437475 hasAuthorship W4249437475A5014584023 @default.
- W4249437475 hasAuthorship W4249437475A5049770701 @default.
- W4249437475 hasBestOaLocation W42494374751 @default.
- W4249437475 hasConcept C104317684 @default.
- W4249437475 hasConcept C107397762 @default.
- W4249437475 hasConcept C124101348 @default.
- W4249437475 hasConcept C127413603 @default.
- W4249437475 hasConcept C146978453 @default.
- W4249437475 hasConcept C150194340 @default.
- W4249437475 hasConcept C154945302 @default.
- W4249437475 hasConcept C162317418 @default.
- W4249437475 hasConcept C177212765 @default.
- W4249437475 hasConcept C199360897 @default.
- W4249437475 hasConcept C21547014 @default.
- W4249437475 hasConcept C2776207758 @default.
- W4249437475 hasConcept C2776214188 @default.
- W4249437475 hasConcept C2777904410 @default.
- W4249437475 hasConcept C2779694297 @default.
- W4249437475 hasConcept C2984074130 @default.
- W4249437475 hasConcept C3020440742 @default.
- W4249437475 hasConcept C41008148 @default.
- W4249437475 hasConcept C43521106 @default.
- W4249437475 hasConcept C54355233 @default.
- W4249437475 hasConcept C70721500 @default.
- W4249437475 hasConcept C77088390 @default.
- W4249437475 hasConcept C86803240 @default.
- W4249437475 hasConcept C93226319 @default.
- W4249437475 hasConceptScore W4249437475C104317684 @default.
- W4249437475 hasConceptScore W4249437475C107397762 @default.
- W4249437475 hasConceptScore W4249437475C124101348 @default.
- W4249437475 hasConceptScore W4249437475C127413603 @default.
- W4249437475 hasConceptScore W4249437475C146978453 @default.
- W4249437475 hasConceptScore W4249437475C150194340 @default.
- W4249437475 hasConceptScore W4249437475C154945302 @default.
- W4249437475 hasConceptScore W4249437475C162317418 @default.
- W4249437475 hasConceptScore W4249437475C177212765 @default.
- W4249437475 hasConceptScore W4249437475C199360897 @default.
- W4249437475 hasConceptScore W4249437475C21547014 @default.
- W4249437475 hasConceptScore W4249437475C2776207758 @default.
- W4249437475 hasConceptScore W4249437475C2776214188 @default.