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• W4283769022 endingPage "104730" @default.
• W4283769022 startingPage "104730" @default.
• W4283769022 abstract "The use of microorganisms for the production of industrially important compounds and enzymes is becoming increasingly important. Eukaryotes have been less widely used than prokaryotes in biotechnology, because of the complexity of their genomic structure and biology. The Yeast2.0 project is an international effort to engineer the yeast Saccharomyces cerevisiae to make it easy to manipulate, and to generate random variants using a system called SCRaMbLE. SCRaMbLE relies on artificial evolution in vitro to identify useful variants, an approach which is time consuming and expensive. We developed an in silico simulator for the SCRaMbLE system, using an evolutionary computing approach, which can be used to investigate and optimize the fitness landscape of the system. We applied the system to the investigation of the fitness landscape of one of the S. saccharomyces chromosomes, and found that our results fitted well with those previously published. We then simulated directed evolution with or without manipulation of SCRaMbLE, and revealed that controlling the SCRaMbLE process could effectively impact directed evolution. Our simulator can be applied to the analysis of the fitness landscapes of any organism for which SCRaMbLE has been implemented." @default.
• W4283769022 created "2022-07-03" @default.
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• W4283769022 date "2022-09-01" @default.
• W4283769022 modified "2023-09-27" @default.
• W4283769022 title "Modelling the fitness landscapes of a SCRaMbLEd yeast genome" @default.
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• W4283769022 doi "https://doi.org/10.1016/j.biosystems.2022.104730" @default.
• W4283769022 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/35772570" @default.
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