FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4285261106> ?p ?o ?g. }

• W4285261106 abstract "Cryo-soft-X-ray tomography is being increasingly used in biological research to study the morphology of cellular compartments and how they change in response to different stimuli, such as viral infections. Segmentation of these compartments is limited by time-consuming manual tools or machine learning algorithms that require extensive time and effort to train. Here we describe Contour, a new, easy-to-use, highly automated segmentation tool that enables accelerated segmentation of tomograms to delineate distinct cellular compartments. Using Contour, cellular structures can be segmented based on their projection intensity and geometrical width by applying a threshold range to the image and excluding noise smaller in width than the cellular compartments of interest. This method is less laborious and less prone to errors from human judgement than current tools that require features to be manually traced, and does not require training datasets as would machine-learning driven segmentation. We show that high-contrast compartments such as mitochondria, lipid droplets, and features at the cell surface can be easily segmented with this technique in the context of investigating herpes simplex virus 1 infection. Contour can extract geometric measurements from 3D segmented volumes, providing a new method to quantitate cryo-soft-X-ray tomography data. Contour can be freely downloaded at github.com/kamallouisnahas/Contour." @default.
• W4285261106 created "2022-07-14" @default.
• W4285261106 creator A5005963306 @default.
• W4285261106 creator A5019845160 @default.
• W4285261106 creator A5045106027 @default.
• W4285261106 creator A5051173185 @default.
• W4285261106 creator A5055365518 @default.
• W4285261106 creator A5071004041 @default.
• W4285261106 date "2022-01-01" @default.
• W4285261106 modified "2023-09-26" @default.
• W4285261106 title "<i>Contour</i>: A semi-automated segmentation and quantitation tool for cryo-soft-X-ray tomography" @default.
• W4285261106 cites W1970448703 @default.
• W4285261106 cites W1997419076 @default.
• W4285261106 cites W2080878189 @default.
• W4285261106 cites W2087838477 @default.
• W4285261106 cites W2108424533 @default.
• W4285261106 cites W2113432364 @default.
• W4285261106 cites W2124351162 @default.
• W4285261106 cites W2146532890 @default.
• W4285261106 cites W2167279371 @default.
• W4285261106 cites W2487704570 @default.
• W4285261106 cites W2592107721 @default.
• W4285261106 cites W2734356283 @default.
• W4285261106 cites W2736183795 @default.
• W4285261106 cites W2795178522 @default.
• W4285261106 cites W2898404836 @default.
• W4285261106 cites W2964122515 @default.
• W4285261106 cites W2975634117 @default.
• W4285261106 cites W3016666924 @default.
• W4285261106 cites W3038883326 @default.
• W4285261106 cites W3043578968 @default.
• W4285261106 cites W3089400930 @default.
• W4285261106 cites W3099878876 @default.
• W4285261106 cites W3103145119 @default.
• W4285261106 cites W3104572769 @default.
• W4285261106 cites W3158432719 @default.
• W4285261106 cites W3161721592 @default.
• W4285261106 cites W3171111902 @default.
• W4285261106 cites W3201820946 @default.
• W4285261106 cites W4226227895 @default.
• W4285261106 cites W4232481350 @default.
• W4285261106 doi "https://doi.org/10.1017/s2633903x22000046" @default.
• W4285261106 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/35600903" @default.
• W4285261106 hasPublicationYear "2022" @default.
• W4285261106 type Work @default.
• W4285261106 citedByCount "4" @default.
• W4285261106 countsByYear W42852611062022 @default.
• W4285261106 countsByYear W42852611062023 @default.
• W4285261106 crossrefType "journal-article" @default.
• W4285261106 hasAuthorship W4285261106A5005963306 @default.
• W4285261106 hasAuthorship W4285261106A5019845160 @default.
• W4285261106 hasAuthorship W4285261106A5045106027 @default.
• W4285261106 hasAuthorship W4285261106A5051173185 @default.
• W4285261106 hasAuthorship W4285261106A5055365518 @default.
• W4285261106 hasAuthorship W4285261106A5071004041 @default.
• W4285261106 hasBestOaLocation W42852611061 @default.
• W4285261106 hasConcept C112353826 @default.
• W4285261106 hasConcept C11413529 @default.
• W4285261106 hasConcept C120665830 @default.
• W4285261106 hasConcept C121332964 @default.
• W4285261106 hasConcept C124504099 @default.
• W4285261106 hasConcept C151730666 @default.
• W4285261106 hasConcept C153180895 @default.
• W4285261106 hasConcept C154945302 @default.
• W4285261106 hasConcept C163716698 @default.
• W4285261106 hasConcept C19609008 @default.
• W4285261106 hasConcept C2779343474 @default.
• W4285261106 hasConcept C31972630 @default.
• W4285261106 hasConcept C41008148 @default.
• W4285261106 hasConcept C57493831 @default.
• W4285261106 hasConcept C86803240 @default.
• W4285261106 hasConcept C89600930 @default.
• W4285261106 hasConceptScore W4285261106C112353826 @default.
• W4285261106 hasConceptScore W4285261106C11413529 @default.
• W4285261106 hasConceptScore W4285261106C120665830 @default.
• W4285261106 hasConceptScore W4285261106C121332964 @default.
• W4285261106 hasConceptScore W4285261106C124504099 @default.
• W4285261106 hasConceptScore W4285261106C151730666 @default.
• W4285261106 hasConceptScore W4285261106C153180895 @default.
• W4285261106 hasConceptScore W4285261106C154945302 @default.
• W4285261106 hasConceptScore W4285261106C163716698 @default.
• W4285261106 hasConceptScore W4285261106C19609008 @default.
• W4285261106 hasConceptScore W4285261106C2779343474 @default.
• W4285261106 hasConceptScore W4285261106C31972630 @default.
• W4285261106 hasConceptScore W4285261106C41008148 @default.
• W4285261106 hasConceptScore W4285261106C57493831 @default.
• W4285261106 hasConceptScore W4285261106C86803240 @default.
• W4285261106 hasConceptScore W4285261106C89600930 @default.
• W4285261106 hasFunder F4320311904 @default.
• W4285261106 hasFunder F4320313096 @default.
• W4285261106 hasFunder F4320320006 @default.
• W4285261106 hasFunder F4320334629 @default.
• W4285261106 hasLocation W42852611061 @default.
• W4285261106 hasLocation W42852611062 @default.
• W4285261106 hasLocation W42852611063 @default.
• W4285261106 hasLocation W42852611064 @default.
• W4285261106 hasLocation W42852611065 @default.
• W4285261106 hasOpenAccess W4285261106 @default.
• W4285261106 hasPrimaryLocation W42852611061 @default.
• W4285261106 hasRelatedWork W131923485 @default.

• next