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- W4287587012 abstract "We present the phylogenetic quartet reconstruction method SAQ (Semi-algebraic quartet reconstruction). SAQ is consistent with the most general Markov model of nucleotide substitution and, in particular, it allows for rate heterogeneity across lineages. Based on the algebraic and semi-algebraic description of distributions that arise from the general Markov model on a quartet, the method outputs normalized weights for the three trivalent quartets (which can be used as input of quartet-base methods). We show that SAQ is a highly competitive method that outperforms most of the well known reconstruction methods on data simulated under the general Markov model on 4-taxon trees. Moreover, it also achieves a high performance on data that violates the underlying assumptions." @default.
- W4287587012 created "2022-07-25" @default.
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- W4287587012 date "2020-11-27" @default.
- W4287587012 modified "2023-09-27" @default.
- W4287587012 title "SAQ: semi-algebraic quartet reconstruction method" @default.
- W4287587012 doi "https://doi.org/10.48550/arxiv.2011.13968" @default.
- W4287587012 hasPublicationYear "2020" @default.
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