Matches in SemOpenAlex for { <https://semopenalex.org/work/W4289702930> ?p ?o ?g. }
Showing items 1 to 74 of
74
with 100 items per page.
- W4289702930 abstract "Alignment of structural RNAs is an important problem with a wide range of applications. Since function is often determined by molecular structure, RNA alignment programs should take into account both sequence and base-pairing information for structural homology identi^Lcation. A number of successful alignment programs are heuristic versions of Sanko^K's optimal algorithm. Most of them require O(n4) run time. This paper describes C++ software, RNAmountAlign, for RNA sequence/structure alignment that runs in O(n3) time and O(n2) space; moreover, our software returns a p-value (transformable to expect value E) based on Karlin-Altschul statistics for local alignment, as well as parameter ^Ltting for local and global alignment. Using incremental mountain height, a representation of structural information computable in cubic time, RNAmountAlign implements quadratic time pairwise local, global and global/semiglobal (query search) alignment using a weighted combination of sequence and structural similarity. RNAmountAlign is capable of performing progressive multiple alignment as well. Benchmarking of RNAmountAlign against LocARNA, LARA, FOLDALIGN, DYNALIGN and STRAL shows that RNAmountAlign has reasonably good accuracy and much faster run time supporting all alignment types." @default.
- W4289702930 created "2022-08-04" @default.
- W4289702930 creator A5038186958 @default.
- W4289702930 creator A5073248317 @default.
- W4289702930 date "2018-08-10" @default.
- W4289702930 modified "2023-09-23" @default.
- W4289702930 title "RNAmountAlign: efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment" @default.
- W4289702930 doi "https://doi.org/10.48550/arxiv.1808.03672" @default.
- W4289702930 hasPublicationYear "2018" @default.
- W4289702930 type Work @default.
- W4289702930 citedByCount "0" @default.
- W4289702930 crossrefType "posted-content" @default.
- W4289702930 hasAuthorship W4289702930A5038186958 @default.
- W4289702930 hasAuthorship W4289702930A5073248317 @default.
- W4289702930 hasBestOaLocation W42897029301 @default.
- W4289702930 hasConcept C104317684 @default.
- W4289702930 hasConcept C11413529 @default.
- W4289702930 hasConcept C154945302 @default.
- W4289702930 hasConcept C167625842 @default.
- W4289702930 hasConcept C173801870 @default.
- W4289702930 hasConcept C180384323 @default.
- W4289702930 hasConcept C184898388 @default.
- W4289702930 hasConcept C185592680 @default.
- W4289702930 hasConcept C199360897 @default.
- W4289702930 hasConcept C2777904410 @default.
- W4289702930 hasConcept C2778112365 @default.
- W4289702930 hasConcept C33923547 @default.
- W4289702930 hasConcept C41008148 @default.
- W4289702930 hasConcept C45484198 @default.
- W4289702930 hasConcept C4668613 @default.
- W4289702930 hasConcept C54355233 @default.
- W4289702930 hasConcept C55493867 @default.
- W4289702930 hasConcept C72802188 @default.
- W4289702930 hasConcept C80444323 @default.
- W4289702930 hasConcept C86803240 @default.
- W4289702930 hasConcept C88031987 @default.
- W4289702930 hasConceptScore W4289702930C104317684 @default.
- W4289702930 hasConceptScore W4289702930C11413529 @default.
- W4289702930 hasConceptScore W4289702930C154945302 @default.
- W4289702930 hasConceptScore W4289702930C167625842 @default.
- W4289702930 hasConceptScore W4289702930C173801870 @default.
- W4289702930 hasConceptScore W4289702930C180384323 @default.
- W4289702930 hasConceptScore W4289702930C184898388 @default.
- W4289702930 hasConceptScore W4289702930C185592680 @default.
- W4289702930 hasConceptScore W4289702930C199360897 @default.
- W4289702930 hasConceptScore W4289702930C2777904410 @default.
- W4289702930 hasConceptScore W4289702930C2778112365 @default.
- W4289702930 hasConceptScore W4289702930C33923547 @default.
- W4289702930 hasConceptScore W4289702930C41008148 @default.
- W4289702930 hasConceptScore W4289702930C45484198 @default.
- W4289702930 hasConceptScore W4289702930C4668613 @default.
- W4289702930 hasConceptScore W4289702930C54355233 @default.
- W4289702930 hasConceptScore W4289702930C55493867 @default.
- W4289702930 hasConceptScore W4289702930C72802188 @default.
- W4289702930 hasConceptScore W4289702930C80444323 @default.
- W4289702930 hasConceptScore W4289702930C86803240 @default.
- W4289702930 hasConceptScore W4289702930C88031987 @default.
- W4289702930 hasLocation W42897029301 @default.
- W4289702930 hasLocation W42897029302 @default.
- W4289702930 hasOpenAccess W4289702930 @default.
- W4289702930 hasPrimaryLocation W42897029301 @default.
- W4289702930 hasRelatedWork W1482324242 @default.
- W4289702930 hasRelatedWork W187239587 @default.
- W4289702930 hasRelatedWork W2051969447 @default.
- W4289702930 hasRelatedWork W2129361631 @default.
- W4289702930 hasRelatedWork W2130740364 @default.
- W4289702930 hasRelatedWork W2158700816 @default.
- W4289702930 hasRelatedWork W2501018882 @default.
- W4289702930 hasRelatedWork W2759306076 @default.
- W4289702930 hasRelatedWork W2948014085 @default.
- W4289702930 hasRelatedWork W88386512 @default.
- W4289702930 isParatext "false" @default.
- W4289702930 isRetracted "false" @default.
- W4289702930 workType "article" @default.