FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4296919005> ?p ?o ?g. }

• W4296919005 endingPage "604" @default.
• W4296919005 startingPage "593" @default.
• W4296919005 abstract "Foxtail millet (Setaria italica) is an important C4 model crop; however, due to its high-density planting and high stature, lodging at the filling stage resulted in a serious reduction in yield and quality. Therefore, it is imperative to identify and deploy the genes controlling foxtail millet plant height. In this study, we used a semi-dwarf line 263A and an elite high-stalk breeding variety, Chuang 29 to construct an F2 population to identify dwarf genes. We performed transcriptome analysis (RNA-seq) using internode tissues sampled at three jointing stages of 263A and Chuang 29, as well as bulk segregant analysis (BSA) on their F2 population. A total of 8918 differentially expressed genes (DEGs) were obtained from RNA-seq analysis, and GO analysis showed that DEGs were enriched in functions such as “gibberellin metabolic process” and “oxidoreductase activity”, which have previously been shown to be associated with plant height. A total 593 mutated genes were screened by BSA-seq method. One hundred and seventy-six out of the 593 mutated genes showed differential expression levels between the two parental lines, and seven genes not only showed differential expression in two or three internode tissues but also showed high genomic variation in coding regions, which indicated they play a crucial role in plant height determination. Among them, we found a gibberellin biosynthesis related GA20 oxidase gene (Seita.5G404900), which had a single-base deletion at the third exon, leading to the frameshift mutation at 263A. Cleaved amplified polymorphic sequence assay and association analysis proved the single-base deletion in Seita.5G404900 co-segregated with dwarf phenotype in two independent F2 populations planted in entirely different environments. Taken together, the candidate genes identified in this study will help to elucidate the genetic basis of foxtail millet plant height, and the molecular marker will be useful for marker-assisted dwarf breeding." @default.
• W4296919005 created "2022-09-24" @default.
• W4296919005 creator A5006050766 @default.
• W4296919005 creator A5009988205 @default.
• W4296919005 creator A5011937969 @default.
• W4296919005 creator A5012447667 @default.
• W4296919005 creator A5023982052 @default.
• W4296919005 creator A5024741363 @default.
• W4296919005 creator A5027835055 @default.
• W4296919005 creator A5033161198 @default.
• W4296919005 creator A5044883702 @default.
• W4296919005 creator A5045934163 @default.
• W4296919005 creator A5065424052 @default.
• W4296919005 creator A5065472413 @default.
• W4296919005 creator A5070812231 @default.
• W4296919005 creator A5074905580 @default.
• W4296919005 creator A5078864903 @default.
• W4296919005 creator A5083926246 @default.
• W4296919005 creator A5085900067 @default.
• W4296919005 date "2023-04-01" @default.
• W4296919005 modified "2023-10-15" @default.
• W4296919005 title "Integrated genomic and transcriptomic analysis reveals genes associated with plant height of foxtail millet" @default.
• W4296919005 cites W1538537184 @default.
• W4296919005 cites W182848191 @default.
• W4296919005 cites W1968234869 @default.
• W4296919005 cites W1970061099 @default.
• W4296919005 cites W1978445416 @default.
• W4296919005 cites W1986115978 @default.
• W4296919005 cites W1990963168 @default.
• W4296919005 cites W2002950769 @default.
• W4296919005 cites W2016623523 @default.
• W4296919005 cites W2022145085 @default.
• W4296919005 cites W2025238960 @default.
• W4296919005 cites W2038123927 @default.
• W4296919005 cites W2039973307 @default.
• W4296919005 cites W2050685506 @default.
• W4296919005 cites W2069681707 @default.
• W4296919005 cites W2070442349 @default.
• W4296919005 cites W2077983592 @default.
• W4296919005 cites W2080737684 @default.
• W4296919005 cites W2089647411 @default.
• W4296919005 cites W2100828771 @default.
• W4296919005 cites W2102278945 @default.
• W4296919005 cites W2113280067 @default.
• W4296919005 cites W2116965389 @default.
• W4296919005 cites W2118653639 @default.
• W4296919005 cites W2125860842 @default.
• W4296919005 cites W2134526812 @default.
• W4296919005 cites W2142967323 @default.
• W4296919005 cites W2144502358 @default.
• W4296919005 cites W2148241929 @default.
• W4296919005 cites W2148299233 @default.
• W4296919005 cites W2150842069 @default.
• W4296919005 cites W2157802142 @default.
• W4296919005 cites W2158830321 @default.
• W4296919005 cites W2165675499 @default.
• W4296919005 cites W2166672269 @default.
• W4296919005 cites W2171005590 @default.
• W4296919005 cites W2179438025 @default.
• W4296919005 cites W2297193134 @default.
• W4296919005 cites W2339017038 @default.
• W4296919005 cites W2506879996 @default.
• W4296919005 cites W2565522224 @default.
• W4296919005 cites W2585949225 @default.
• W4296919005 cites W2611604995 @default.
• W4296919005 cites W2621468703 @default.
• W4296919005 cites W2768019707 @default.
• W4296919005 cites W2781120834 @default.
• W4296919005 cites W2800941576 @default.
• W4296919005 cites W2912334238 @default.
• W4296919005 cites W2912368925 @default.
• W4296919005 cites W2951912016 @default.
• W4296919005 cites W2965877173 @default.
• W4296919005 cites W3082465275 @default.
• W4296919005 cites W3095362247 @default.
• W4296919005 cites W3121013246 @default.
• W4296919005 cites W4205505496 @default.
• W4296919005 cites W4206963977 @default.
• W4296919005 doi "https://doi.org/10.1016/j.cj.2022.09.003" @default.
• W4296919005 hasPublicationYear "2023" @default.
• W4296919005 type Work @default.
• W4296919005 citedByCount "1" @default.
• W4296919005 countsByYear W42969190052023 @default.
• W4296919005 crossrefType "journal-article" @default.
• W4296919005 hasAuthorship W4296919005A5006050766 @default.
• W4296919005 hasAuthorship W4296919005A5009988205 @default.
• W4296919005 hasAuthorship W4296919005A5011937969 @default.
• W4296919005 hasAuthorship W4296919005A5012447667 @default.
• W4296919005 hasAuthorship W4296919005A5023982052 @default.
• W4296919005 hasAuthorship W4296919005A5024741363 @default.
• W4296919005 hasAuthorship W4296919005A5027835055 @default.
• W4296919005 hasAuthorship W4296919005A5033161198 @default.
• W4296919005 hasAuthorship W4296919005A5044883702 @default.
• W4296919005 hasAuthorship W4296919005A5045934163 @default.
• W4296919005 hasAuthorship W4296919005A5065424052 @default.
• W4296919005 hasAuthorship W4296919005A5065472413 @default.
• W4296919005 hasAuthorship W4296919005A5070812231 @default.
• W4296919005 hasAuthorship W4296919005A5074905580 @default.

• next