FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4308998918> ?p ?o ?g. }

• W4308998918 abstract "Clematis is one of the largest genera of Ranunculaceae with many phylogenetic problems left to be resolved. Clematis species have considerable genome size of more than 7 Gbp, and there was no whole-genome reference sequence published in this genus. This raises difficulties in acquiring nuclear genome data for its phylogenetic analysis. Previous studies based on Sanger sequencing data, plastid genome data, and nrDNA sequences did not well resolve the phylogeny of Clematis. In this study, we used genome skimming and transcriptome data to assemble the plastid genome sequences, nuclear single nucleotide polymorphisms (SNPs) datasets, and single-copy nuclear orthologous genes (SCOGs) to reconstruct the phylogenetic backbone of Clematis, and test effectiveness of these genome partitioning methods. We also further analyzed the discordance among nuclear gene trees and between plastid and nuclear phylogenies. The results showed that the SCOGs datasets, assembled from transcriptome method, well resolved the phylogenetic backbone of Clematis. The nuclear SNPs datasets from genome skimming method can also produce similar results with the SCOGs data. In contrast to the plastid phylogeny, the phylogeny resolved by nuclear genome data is more robust and better corresponds to morphological characters. Our results suggested that rapid species radiation may have generated high level of incomplete lineage sorting, which was the major cause of nuclear gene discordance. Our simulation also showed that there may have been frequent interspecific hybridization events, which led to some of the cyto-nuclear discordances in Clematis. This study not only provides the first robust phylogenetic backbone of Clematis based on nuclear genome data, but also provides suggestions of genome partitioning strategies for the phylogenomic study of other plant taxa." @default.
• W4308998918 created "2022-11-20" @default.
• W4308998918 creator A5004530167 @default.
• W4308998918 creator A5021879135 @default.
• W4308998918 creator A5030393358 @default.
• W4308998918 creator A5033054535 @default.
• W4308998918 creator A5043551610 @default.
• W4308998918 creator A5048790398 @default.
• W4308998918 creator A5077972623 @default.
• W4308998918 date "2022-11-14" @default.
• W4308998918 modified "2023-09-26" @default.
• W4308998918 title "Genome-partitioning strategy, plastid and nuclear phylogenomic discordance, and its evolutionary implications of Clematis (Ranunculaceae)" @default.
• W4308998918 cites W1571452856 @default.
• W4308998918 cites W1619833779 @default.
• W4308998918 cites W1886547141 @default.
• W4308998918 cites W1923209435 @default.
• W4308998918 cites W1969042907 @default.
• W4308998918 cites W1979835060 @default.
• W4308998918 cites W2008054392 @default.
• W4308998918 cites W2043719922 @default.
• W4308998918 cites W2045204781 @default.
• W4308998918 cites W2091245767 @default.
• W4308998918 cites W2098126593 @default.
• W4308998918 cites W2105452380 @default.
• W4308998918 cites W2119180969 @default.
• W4308998918 cites W2126419817 @default.
• W4308998918 cites W2128880918 @default.
• W4308998918 cites W2129949113 @default.
• W4308998918 cites W2139736670 @default.
• W4308998918 cites W2141052558 @default.
• W4308998918 cites W2142718629 @default.
• W4308998918 cites W2148698435 @default.
• W4308998918 cites W2155628349 @default.
• W4308998918 cites W2159038577 @default.
• W4308998918 cites W2160378127 @default.
• W4308998918 cites W2170747616 @default.
• W4308998918 cites W2170754377 @default.
• W4308998918 cites W2181083343 @default.
• W4308998918 cites W2388741932 @default.
• W4308998918 cites W2495624718 @default.
• W4308998918 cites W2509570109 @default.
• W4308998918 cites W2581890004 @default.
• W4308998918 cites W2583728669 @default.
• W4308998918 cites W2599343934 @default.
• W4308998918 cites W2725173800 @default.
• W4308998918 cites W2732129506 @default.
• W4308998918 cites W2752511450 @default.
• W4308998918 cites W2795697644 @default.
• W4308998918 cites W2800301968 @default.
• W4308998918 cites W2801361050 @default.
• W4308998918 cites W2810453411 @default.
• W4308998918 cites W2810872464 @default.
• W4308998918 cites W2883855109 @default.
• W4308998918 cites W2888440152 @default.
• W4308998918 cites W2903648433 @default.
• W4308998918 cites W2915653820 @default.
• W4308998918 cites W2918221143 @default.
• W4308998918 cites W2918578996 @default.
• W4308998918 cites W2925937384 @default.
• W4308998918 cites W2943796178 @default.
• W4308998918 cites W2948507313 @default.
• W4308998918 cites W2949848068 @default.
• W4308998918 cites W2950209713 @default.
• W4308998918 cites W2950990648 @default.
• W4308998918 cites W2951912016 @default.
• W4308998918 cites W2966484189 @default.
• W4308998918 cites W2973157054 @default.
• W4308998918 cites W2980191495 @default.
• W4308998918 cites W2980958588 @default.
• W4308998918 cites W2981543307 @default.
• W4308998918 cites W2981902885 @default.
• W4308998918 cites W2997916675 @default.
• W4308998918 cites W3007669493 @default.
• W4308998918 cites W3007793058 @default.
• W4308998918 cites W3008497320 @default.
• W4308998918 cites W3015791782 @default.
• W4308998918 cites W3024108179 @default.
• W4308998918 cites W3038356693 @default.
• W4308998918 cites W3043024372 @default.
• W4308998918 cites W3075891525 @default.
• W4308998918 cites W3080997834 @default.
• W4308998918 cites W3084201551 @default.
• W4308998918 cites W3092893000 @default.
• W4308998918 cites W3093101461 @default.
• W4308998918 cites W3106779061 @default.
• W4308998918 cites W3167445956 @default.
• W4308998918 cites W3183215033 @default.
• W4308998918 cites W3184480771 @default.
• W4308998918 cites W3207081402 @default.
• W4308998918 cites W3207920183 @default.
• W4308998918 cites W3209782606 @default.
• W4308998918 cites W3215110686 @default.
• W4308998918 cites W4205408709 @default.
• W4308998918 cites W4221042877 @default.
• W4308998918 cites W4282834620 @default.
• W4308998918 cites W4299503099 @default.
• W4308998918 doi "https://doi.org/10.3389/fpls.2022.1059379" @default.
• W4308998918 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/36452086" @default.
• W4308998918 hasPublicationYear "2022" @default.
• W4308998918 type Work @default.

• next