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- W4310946906 abstract "Abstract Asparagus setaceus (Kunth) Jessop is a horticultural plant of the genus Asparagus . Herein, the whole chloroplast (cp) genome of A. setaceus was sequenced with PacBio and Illumina sequencing systems. The cp genome shows a characteristic quadripartite structure with 158,076 bp. In total, 135 genes were annotated, containing 89 protein-coding, 38 tRNA, and 8 rRNA genes. Contrast with the previous cp genome of A. setaceus registered in NCBI, we identified 7 single-nucleotide polymorphisms and 15 indels, mostly situated in noncoding areas. Meanwhile, 36 repeat structures and 260 simple sequence repeats were marked out. A bias for A/T-ending codons was shown in this cp genome. Furthermore, we predicted 78 RNA-editing sites in 29 genes, which were all for C-to-U transitions. And it was also proven that positive selection was exerted on the rpoC1 gene of A. setaceus with the K a / K s data. Meanwhile, a conservative gene order and highly similar sequences of protein-coding genes were revealed within Asparagus species. Phylogenetic tree analysis indicated that A. setaceus was a sister to Asparagus cochinchinensis . Taken together, our released genome provided valuable information for the gene composition, genetics comparison, and the phylogeny studies of A. setaceus ." @default.
- W4310946906 created "2022-12-21" @default.
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- W4310946906 date "2022-01-01" @default.
- W4310946906 modified "2023-10-18" @default.
- W4310946906 title "The entire chloroplast genome sequence of <i>Asparagus setaceus</i> (Kunth) Jessop: Genome structure, gene composition, and phylogenetic analysis in Asparagaceae" @default.
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- W4310946906 doi "https://doi.org/10.1515/biol-2022-0497" @default.
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