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• W4311861512 abstract "RNA-seq has become a state-of-the-art technique for transcriptomic studies. Advances in both RNA-seq techniques and the corresponding analysis tools and pipelines have unprecedently shaped our understanding in almost every aspects of plant sciences. Notably, the integration of huge amount of RNA-seq with other omic data sets in the model plants and major crop species have facilitated plant regulomics, while the RNA-seq analysis has still been primarily used for differential expression analysis in many less-studied plant species. To unleash the analytical power of RNA-seq in plant species, especially less-studied species and biomass crops, we summarize recent achievements of RNA-seq analysis in the major plant species and representative tools in the four types of application: (1) transcriptome assembly, (2) construction of expression atlas, (3) network analysis, and (4) structural alteration. We emphasize the importance of expression atlas, coexpression networks and predictions of gene regulatory relationships in moving plant transcriptomes toward regulomics, an omic view of genome-wide transcription regulation. We highlight what can be achieved in plant research with RNA-seq by introducing a list of representative RNA-seq analysis tools and resources that are developed for certain minor species or suitable for the analysis without species limitation. In summary, we provide an updated digest on RNA-seq tools, resources and the diverse applications for plant research, and our perspective on the power and challenges of short-read RNA-seq analysis from a regulomic point view. A full utilization of these fruitful RNA-seq resources will promote plant omic research to a higher level, especially in those less studied species." @default.
• W4311861512 created "2023-01-01" @default.
• W4311861512 creator A5014955451 @default.
• W4311861512 creator A5029962549 @default.
• W4311861512 creator A5033897489 @default.
• W4311861512 creator A5090283936 @default.
• W4311861512 creator A5091066581 @default.
• W4311861512 date "2022-12-08" @default.
• W4311861512 modified "2023-10-18" @default.
• W4311861512 title "Unleashing the power within short-read RNA-seq for plant research: Beyond differential expression analysis and toward regulomics" @default.
• W4311861512 cites W1596754459 @default.
• W4311861512 cites W1635484243 @default.
• W4311861512 cites W1748901113 @default.
• W4311861512 cites W1864021403 @default.
• W4311861512 cites W1948310546 @default.
• W4311861512 cites W1966327575 @default.
• W4311861512 cites W1966799302 @default.
• W4311861512 cites W1973249296 @default.
• W4311861512 cites W1980782172 @default.
• W4311861512 cites W1984708728 @default.
• W4311861512 cites W1986169934 @default.
• W4311861512 cites W1993025082 @default.
• W4311861512 cites W1995120919 @default.
• W4311861512 cites W1999574084 @default.
• W4311861512 cites W2008995162 @default.
• W4311861512 cites W2011657487 @default.
• W4311861512 cites W2011920499 @default.
• W4311861512 cites W2017686560 @default.
• W4311861512 cites W2033579591 @default.
• W4311861512 cites W2035908878 @default.
• W4311861512 cites W2041522424 @default.
• W4311861512 cites W2046583421 @default.
• W4311861512 cites W2047452386 @default.
• W4311861512 cites W2048120844 @default.
• W4311861512 cites W2052500097 @default.
• W4311861512 cites W2055770801 @default.
• W4311861512 cites W2090610796 @default.
• W4311861512 cites W2096652998 @default.
• W4311861512 cites W2097647914 @default.
• W4311861512 cites W2100305481 @default.
• W4311861512 cites W2103823493 @default.
• W4311861512 cites W2106045204 @default.
• W4311861512 cites W2108264419 @default.
• W4311861512 cites W2109322710 @default.
• W4311861512 cites W2110392562 @default.
• W4311861512 cites W2112368234 @default.
• W4311861512 cites W2112888168 @default.
• W4311861512 cites W2114104545 @default.
• W4311861512 cites W2119204091 @default.
• W4311861512 cites W2126419817 @default.
• W4311861512 cites W2129458619 @default.
• W4311861512 cites W2134526812 @default.
• W4311861512 cites W2135594369 @default.
• W4311861512 cites W2138207763 @default.
• W4311861512 cites W2141290377 @default.
• W4311861512 cites W2141292707 @default.
• W4311861512 cites W2156841387 @default.
• W4311861512 cites W2157000778 @default.
• W4311861512 cites W2159767718 @default.
• W4311861512 cites W2161030070 @default.
• W4311861512 cites W2161207752 @default.
• W4311861512 cites W2163296727 @default.
• W4311861512 cites W2169101662 @default.
• W4311861512 cites W2178279848 @default.
• W4311861512 cites W2179438025 @default.
• W4311861512 cites W2236822143 @default.
• W4311861512 cites W2262433536 @default.
• W4311861512 cites W2268783650 @default.
• W4311861512 cites W2276982311 @default.
• W4311861512 cites W2300651570 @default.
• W4311861512 cites W2334656801 @default.
• W4311861512 cites W2336835708 @default.
• W4311861512 cites W2401562190 @default.
• W4311861512 cites W2418044989 @default.
• W4311861512 cites W2442741407 @default.
• W4311861512 cites W2463761386 @default.
• W4311861512 cites W2470702181 @default.
• W4311861512 cites W2487617124 @default.
• W4311861512 cites W2510875395 @default.
• W4311861512 cites W2511700686 @default.
• W4311861512 cites W2513525320 @default.
• W4311861512 cites W2545591455 @default.
• W4311861512 cites W2560846489 @default.
• W4311861512 cites W2566929744 @default.
• W4311861512 cites W2574248997 @default.
• W4311861512 cites W2587528990 @default.
• W4311861512 cites W2610303468 @default.
• W4311861512 cites W2621113713 @default.
• W4311861512 cites W2701316097 @default.
• W4311861512 cites W2727356059 @default.
• W4311861512 cites W2731748842 @default.
• W4311861512 cites W2736478185 @default.
• W4311861512 cites W2750800875 @default.
• W4311861512 cites W2762558066 @default.
• W4311861512 cites W2763876357 @default.
• W4311861512 cites W2768308516 @default.
• W4311861512 cites W2769591387 @default.
• W4311861512 cites W2771852612 @default.
• W4311861512 cites W2773758297 @default.
• W4311861512 cites W2775315818 @default.

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