Matches in SemOpenAlex for { <https://semopenalex.org/work/W4313144974> ?p ?o ?g. }
Showing items 1 to 82 of
82
with 100 items per page.
- W4313144974 endingPage "90" @default.
- W4313144974 startingPage "79" @default.
- W4313144974 abstract "De novo genome assembly of sequenced reads is a fundamental problem in bioinformatics. When there is no reference genome sequence to guide the process, many assemblers programs consider using the de Bruijn Graph data structure to improve performances. However, the construction of such a graph has a high computational cost, mainly due to internal RAM consumption in the presence of very large and repeated read datasets. Building a de Bruijn Graph relies on a broad set of k-mers. Some existing approaches use external memory processing to make it feasible. This work proposes an approach for constructing the de Bruijn graph that does not generate all k-mers during the execution. An external memory processing allows reducing the high number of duplicate k-mers and, consequently, reduces the total number of k-mers that incur on the number of I/O operations. Some practical experiments are presented, showing the solution’s viability and its improvements over other common assemblers in the literature. Our solution reduces the computational requirements and enables execution feasibility." @default.
- W4313144974 created "2023-01-06" @default.
- W4313144974 creator A5069256405 @default.
- W4313144974 creator A5085416987 @default.
- W4313144974 date "2022-01-01" @default.
- W4313144974 modified "2023-09-29" @default.
- W4313144974 title "An External Memory Approach for Large Genome De Novo Assembly" @default.
- W4313144974 cites W1964377951 @default.
- W4313144974 cites W1966822396 @default.
- W4313144974 cites W2006192792 @default.
- W4313144974 cites W2038142281 @default.
- W4313144974 cites W2102532874 @default.
- W4313144974 cites W2111071896 @default.
- W4313144974 cites W2127768708 @default.
- W4313144974 cites W2141370774 @default.
- W4313144974 cites W2152073175 @default.
- W4313144974 cites W2161546116 @default.
- W4313144974 cites W2438121987 @default.
- W4313144974 cites W2571772850 @default.
- W4313144974 cites W3004735391 @default.
- W4313144974 cites W3023256766 @default.
- W4313144974 doi "https://doi.org/10.1007/978-3-031-21175-1_9" @default.
- W4313144974 hasPublicationYear "2022" @default.
- W4313144974 type Work @default.
- W4313144974 citedByCount "0" @default.
- W4313144974 crossrefType "book-chapter" @default.
- W4313144974 hasAuthorship W4313144974A5069256405 @default.
- W4313144974 hasAuthorship W4313144974A5085416987 @default.
- W4313144974 hasConcept C104317684 @default.
- W4313144974 hasConcept C118615104 @default.
- W4313144974 hasConcept C132525143 @default.
- W4313144974 hasConcept C150194340 @default.
- W4313144974 hasConcept C162317418 @default.
- W4313144974 hasConcept C170320093 @default.
- W4313144974 hasConcept C173608175 @default.
- W4313144974 hasConcept C177264268 @default.
- W4313144974 hasConcept C18949551 @default.
- W4313144974 hasConcept C199360897 @default.
- W4313144974 hasConcept C20218877 @default.
- W4313144974 hasConcept C33923547 @default.
- W4313144974 hasConcept C41008148 @default.
- W4313144974 hasConcept C55493867 @default.
- W4313144974 hasConcept C80444323 @default.
- W4313144974 hasConcept C82687282 @default.
- W4313144974 hasConcept C86803240 @default.
- W4313144974 hasConcept C9390403 @default.
- W4313144974 hasConceptScore W4313144974C104317684 @default.
- W4313144974 hasConceptScore W4313144974C118615104 @default.
- W4313144974 hasConceptScore W4313144974C132525143 @default.
- W4313144974 hasConceptScore W4313144974C150194340 @default.
- W4313144974 hasConceptScore W4313144974C162317418 @default.
- W4313144974 hasConceptScore W4313144974C170320093 @default.
- W4313144974 hasConceptScore W4313144974C173608175 @default.
- W4313144974 hasConceptScore W4313144974C177264268 @default.
- W4313144974 hasConceptScore W4313144974C18949551 @default.
- W4313144974 hasConceptScore W4313144974C199360897 @default.
- W4313144974 hasConceptScore W4313144974C20218877 @default.
- W4313144974 hasConceptScore W4313144974C33923547 @default.
- W4313144974 hasConceptScore W4313144974C41008148 @default.
- W4313144974 hasConceptScore W4313144974C55493867 @default.
- W4313144974 hasConceptScore W4313144974C80444323 @default.
- W4313144974 hasConceptScore W4313144974C82687282 @default.
- W4313144974 hasConceptScore W4313144974C86803240 @default.
- W4313144974 hasConceptScore W4313144974C9390403 @default.
- W4313144974 hasLocation W43131449741 @default.
- W4313144974 hasOpenAccess W4313144974 @default.
- W4313144974 hasPrimaryLocation W43131449741 @default.
- W4313144974 hasRelatedWork W1997246534 @default.
- W4313144974 hasRelatedWork W2079944089 @default.
- W4313144974 hasRelatedWork W2122316710 @default.
- W4313144974 hasRelatedWork W2156104322 @default.
- W4313144974 hasRelatedWork W2301039091 @default.
- W4313144974 hasRelatedWork W2949121831 @default.
- W4313144974 hasRelatedWork W3215786367 @default.
- W4313144974 hasRelatedWork W4301429973 @default.
- W4313144974 hasRelatedWork W4313144974 @default.
- W4313144974 hasRelatedWork W2951695076 @default.
- W4313144974 isParatext "false" @default.
- W4313144974 isRetracted "false" @default.
- W4313144974 workType "book-chapter" @default.