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• W4313261769 abstract "Scientists seeking to understand the genomic basis of bacterial phenotypes, such as antibiotic resistance, today have access to an unprecedented number of complete and nearly complete genomes. Making sense of these data requires computational tools able to perform multiple-genome comparisons efficiently, yet currently available tools cannot scale beyond several tens of genomes.We describe PRAWNS, an efficient and scalable tool for multiple-genome analysis. PRAWNS defines a concise set of genomic features (metablocks), as well as pairwise relationships between them, which can be used as a basis for large-scale genotype-phenotype association studies. We demonstrate the effectiveness of PRAWNS by identifying genomic regions associated with antibiotic resistance in Acinetobacter baumannii.PRAWNS is implemented in C++ and Python3, licensed under the GPLv3 license, and freely downloadable from GitHub (https://github.com/KiranJavkar/PRAWNS.git).Supplementary data are available at Bioinformatics online." @default.
• W4313261769 created "2023-01-06" @default.
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• W4313261769 date "2022-12-29" @default.
• W4313261769 modified "2023-09-30" @default.
• W4313261769 title "PRAWNS: compact pan-genomic features for whole-genome population genomics" @default.
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• W4313261769 doi "https://doi.org/10.1093/bioinformatics/btac844" @default.
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