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- W4313451024 abstract "Abstract As part of the HuBMAP Consortium we have been developing methods for uniformly processing and indexing multiple single-cell datasets, which enable efficient integration of data from different platforms. HuBMAP computational pipelines have so far focused on unimodal data types such as single-cell/nucleus RNA sequencing and single nucleus ATAC-seq. Here we present HBM-CITEseq, a processing pipeline for Cellular Indexing of Transcriptomes and Epitopes by Sequencing (CITE-seq) datasets, the first multimodal sequencing processing pipeline for the HuBMAP Consortium, with transcriptomic outputs from HBM-CITEseq matching those of the HuBMAP RNA-seq pipeline. HBM-CITEseq is a CWL workflow wrapping command-line tools encapsulated in Docker images. It is freely available on GitHub at https://github.com/hubmapconsortium/citeseq-pipeline ." @default.
- W4313451024 created "2023-01-06" @default.
- W4313451024 creator A5039730770 @default.
- W4313451024 creator A5091838807 @default.
- W4313451024 date "2022-12-20" @default.
- W4313451024 modified "2023-09-29" @default.
- W4313451024 title "HBM-CITEseq: a uniform CITE-seq processing pipeline for the HuBMAP Consortium" @default.
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- W4313451024 doi "https://doi.org/10.1101/2022.12.19.521058" @default.
- W4313451024 hasPublicationYear "2022" @default.
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