FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4317883614> ?p ?o ?g. }

• W4317883614 abstract "Circular RNAs (circRNAs) are a class of covalenty closed non-coding RNAs that have garnered increased attention from the research community due to their stability, tissue-specific expression and role as transcriptional modulators via sequestration of miRNAs. Currently, multiple quantification tools capable of detecting circRNAs exist, yet none delineate circRNA-miRNA interactions, and only one employs differential expression analysis. Efforts have been made to bridge this gap by way of circRNA workflows, however these workflows are limited by both the types of analyses available and computational skills required to run them.We present nf-core/circrna, a multi-functional, automated high-throughput pipeline implemented in nextflow that allows users to characterise the role of circRNAs in RNA Sequencing datasets via three analysis modules: (1) circRNA quantification, robust filtering and annotation (2) miRNA target prediction of the mature spliced sequence and (3) differential expression analysis. nf-core/circrna has been developed within the nf-core framework, ensuring robust portability across computing environments via containerisation, parallel deployment on cluster/cloud-based infrastructures, comprehensive documentation and maintenance support.nf-core/circrna reduces the barrier to entry for researchers by providing an easy-to-use, platform-independent and scalable workflow for circRNA analyses. Source code, documentation and installation instructions are freely available at https://nf-co.re/circrna and https://github.com/nf-core/circrna ." @default.
• W4317883614 created "2023-01-25" @default.
• W4317883614 creator A5009285897 @default.
• W4317883614 creator A5048830299 @default.
• W4317883614 creator A5065444619 @default.
• W4317883614 date "2023-01-24" @default.
• W4317883614 modified "2023-10-09" @default.
• W4317883614 title "nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs" @default.
• W4317883614 cites W1521279639 @default.
• W4317883614 cites W1770991729 @default.
• W4317883614 cites W1991055245 @default.
• W4317883614 cites W2004572268 @default.
• W4317883614 cites W2023139734 @default.
• W4317883614 cites W2031593782 @default.
• W4317883614 cites W2034305079 @default.
• W4317883614 cites W2037691883 @default.
• W4317883614 cites W2051615060 @default.
• W4317883614 cites W2054576015 @default.
• W4317883614 cites W2058835062 @default.
• W4317883614 cites W2064165694 @default.
• W4317883614 cites W2066747004 @default.
• W4317883614 cites W2088128227 @default.
• W4317883614 cites W2102278945 @default.
• W4317883614 cites W2109393499 @default.
• W4317883614 cites W2115662330 @default.
• W4317883614 cites W2120456037 @default.
• W4317883614 cites W2126144698 @default.
• W4317883614 cites W2134629862 @default.
• W4317883614 cites W2139898631 @default.
• W4317883614 cites W2147625377 @default.
• W4317883614 cites W2155158847 @default.
• W4317883614 cites W2169456326 @default.
• W4317883614 cites W2179438025 @default.
• W4317883614 cites W2196247406 @default.
• W4317883614 cites W2464424326 @default.
• W4317883614 cites W2476707374 @default.
• W4317883614 cites W2510875395 @default.
• W4317883614 cites W2530008209 @default.
• W4317883614 cites W2546799364 @default.
• W4317883614 cites W2577616272 @default.
• W4317883614 cites W2589026194 @default.
• W4317883614 cites W2593315117 @default.
• W4317883614 cites W2605897695 @default.
• W4317883614 cites W2622004629 @default.
• W4317883614 cites W2791041369 @default.
• W4317883614 cites W2901603842 @default.
• W4317883614 cites W2944599033 @default.
• W4317883614 cites W2964382959 @default.
• W4317883614 cites W2969252054 @default.
• W4317883614 cites W2996796392 @default.
• W4317883614 cites W3006653136 @default.
• W4317883614 cites W3021278324 @default.
• W4317883614 cites W3030022534 @default.
• W4317883614 cites W3131007245 @default.
• W4317883614 cites W3196804957 @default.
• W4317883614 cites W3208194349 @default.
• W4317883614 doi "https://doi.org/10.1186/s12859-022-05125-8" @default.
• W4317883614 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/36694127" @default.
• W4317883614 hasPublicationYear "2023" @default.
• W4317883614 type Work @default.
• W4317883614 citedByCount "0" @default.
• W4317883614 crossrefType "journal-article" @default.
• W4317883614 hasAuthorship W4317883614A5009285897 @default.
• W4317883614 hasAuthorship W4317883614A5048830299 @default.
• W4317883614 hasAuthorship W4317883614A5065444619 @default.
• W4317883614 hasBestOaLocation W43178836141 @default.
• W4317883614 hasConcept C177212765 @default.
• W4317883614 hasConcept C199360897 @default.
• W4317883614 hasConcept C41008148 @default.
• W4317883614 hasConcept C48044578 @default.
• W4317883614 hasConcept C63000827 @default.
• W4317883614 hasConcept C70721500 @default.
• W4317883614 hasConcept C77088390 @default.
• W4317883614 hasConcept C86803240 @default.
• W4317883614 hasConceptScore W4317883614C177212765 @default.
• W4317883614 hasConceptScore W4317883614C199360897 @default.
• W4317883614 hasConceptScore W4317883614C41008148 @default.
• W4317883614 hasConceptScore W4317883614C48044578 @default.
• W4317883614 hasConceptScore W4317883614C63000827 @default.
• W4317883614 hasConceptScore W4317883614C70721500 @default.
• W4317883614 hasConceptScore W4317883614C77088390 @default.
• W4317883614 hasConceptScore W4317883614C86803240 @default.
• W4317883614 hasFunder F4320320847 @default.
• W4317883614 hasIssue "1" @default.
• W4317883614 hasLocation W43178836141 @default.
• W4317883614 hasLocation W43178836142 @default.
• W4317883614 hasLocation W43178836143 @default.
• W4317883614 hasOpenAccess W4317883614 @default.
• W4317883614 hasPrimaryLocation W43178836141 @default.
• W4317883614 hasRelatedWork W110609005 @default.
• W4317883614 hasRelatedWork W1502818834 @default.
• W4317883614 hasRelatedWork W1517479908 @default.
• W4317883614 hasRelatedWork W2077030552 @default.
• W4317883614 hasRelatedWork W2120994104 @default.
• W4317883614 hasRelatedWork W2211967836 @default.
• W4317883614 hasRelatedWork W2365235480 @default.
• W4317883614 hasRelatedWork W2377544373 @default.
• W4317883614 hasRelatedWork W2784803070 @default.
• W4317883614 hasRelatedWork W2794878329 @default.
• W4317883614 hasVolume "24" @default.

• next