Matches in SemOpenAlex for { <https://semopenalex.org/work/W4320161184> ?p ?o ?g. }
Showing items 1 to 59 of
59
with 100 items per page.
- W4320161184 abstract "SAHDA is a Snakemake based workflow tool designed identify and analyse genes/features of interest within small haplotype genomes. The workflow will assemble haploid genomes de novo from short paired-end reads, create a local BLAST database and query genes of interest. Where genes of interest are detected, a multiple alignment is performed for each gene. The tool also allows the input of intermediary files meaning that a combination of both raw sequencing libraries and assembled genomes can be investigated simultaneously. Primary input: Raw paired end sequencing libraries fastq.gz Optional intermediary inputs/outputs: Trimmed paired end sequencing libraries fastq.gz De novo genome assembly fasta Local BLAST database for each assembly BLAST search results for each query on each assembly Retrieved fasta sequences for each query on each assembly Primary output: Multiple alignment fasta file for each query. GitHub repository: https://github.com/JoeBlackSci/SAHDA" @default.
- W4320161184 created "2023-02-13" @default.
- W4320161184 creator A5078185714 @default.
- W4320161184 date "2021-04-16" @default.
- W4320161184 modified "2023-10-17" @default.
- W4320161184 title "SAHDA: Sequence Alignment from Haplotype De Novo Assembly v1" @default.
- W4320161184 doi "https://doi.org/10.17504/protocols.io.q26g78w58lwz/v1" @default.
- W4320161184 hasPublicationYear "2021" @default.
- W4320161184 type Work @default.
- W4320161184 citedByCount "0" @default.
- W4320161184 crossrefType "posted-content" @default.
- W4320161184 hasAuthorship W4320161184A5078185714 @default.
- W4320161184 hasBestOaLocation W43201611841 @default.
- W4320161184 hasConcept C104317684 @default.
- W4320161184 hasConcept C135763542 @default.
- W4320161184 hasConcept C141231307 @default.
- W4320161184 hasConcept C150194340 @default.
- W4320161184 hasConcept C162317418 @default.
- W4320161184 hasConcept C177212765 @default.
- W4320161184 hasConcept C18949551 @default.
- W4320161184 hasConcept C192953774 @default.
- W4320161184 hasConcept C197754878 @default.
- W4320161184 hasConcept C23123220 @default.
- W4320161184 hasConcept C41008148 @default.
- W4320161184 hasConcept C54355233 @default.
- W4320161184 hasConcept C70721500 @default.
- W4320161184 hasConcept C77088390 @default.
- W4320161184 hasConcept C86803240 @default.
- W4320161184 hasConceptScore W4320161184C104317684 @default.
- W4320161184 hasConceptScore W4320161184C135763542 @default.
- W4320161184 hasConceptScore W4320161184C141231307 @default.
- W4320161184 hasConceptScore W4320161184C150194340 @default.
- W4320161184 hasConceptScore W4320161184C162317418 @default.
- W4320161184 hasConceptScore W4320161184C177212765 @default.
- W4320161184 hasConceptScore W4320161184C18949551 @default.
- W4320161184 hasConceptScore W4320161184C192953774 @default.
- W4320161184 hasConceptScore W4320161184C197754878 @default.
- W4320161184 hasConceptScore W4320161184C23123220 @default.
- W4320161184 hasConceptScore W4320161184C41008148 @default.
- W4320161184 hasConceptScore W4320161184C54355233 @default.
- W4320161184 hasConceptScore W4320161184C70721500 @default.
- W4320161184 hasConceptScore W4320161184C77088390 @default.
- W4320161184 hasConceptScore W4320161184C86803240 @default.
- W4320161184 hasLocation W43201611841 @default.
- W4320161184 hasOpenAccess W4320161184 @default.
- W4320161184 hasPrimaryLocation W43201611841 @default.
- W4320161184 hasRelatedWork W1975465622 @default.
- W4320161184 hasRelatedWork W1977744696 @default.
- W4320161184 hasRelatedWork W2123933193 @default.
- W4320161184 hasRelatedWork W2582968398 @default.
- W4320161184 hasRelatedWork W2779945812 @default.
- W4320161184 hasRelatedWork W2897233545 @default.
- W4320161184 hasRelatedWork W4211093350 @default.
- W4320161184 hasRelatedWork W4220697504 @default.
- W4320161184 hasRelatedWork W4281950474 @default.
- W4320161184 hasRelatedWork W4289755169 @default.
- W4320161184 isParatext "false" @default.
- W4320161184 isRetracted "false" @default.
- W4320161184 workType "article" @default.