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- W4362602579 abstract "Chromatin regions that interact with the nuclear lamina are often heterochromatic, repressed in gene expression, and in the spatial B compartment. However, exceptions to this trend allow us to examine the relative impact of lamin association and spatial compartment on gene regulation. Here, we compared lamin association, gene expression, Hi-C, and histone mark datasets from cell lines representing different states of differentiation across different cell-type lineages. With these data, we compare, for example, gene expression differences when a B compartment region is associated with the nuclear lamina in one cell type but not in another. In general, we observed an additive rather than redundant effect of lamin association and compartment status. But, whether compartment status or lamin association had a dominant influence on gene expression varied by cell type. Finally, we identified how compartment and lamin association influence the likelihood of gene induction or repression in response to physicochemical treatment." @default.
- W4362602579 created "2023-04-06" @default.
- W4362602579 creator A5017727012 @default.
- W4362602579 creator A5019283918 @default.
- W4362602579 creator A5059568166 @default.
- W4362602579 date "2023-04-05" @default.
- W4362602579 modified "2023-10-16" @default.
- W4362602579 title "Differential contributions of nuclear lamina association and genome compartmentalization to gene regulation" @default.
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- W4362602579 doi "https://doi.org/10.1080/19491034.2023.2197693" @default.
- W4362602579 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/37017584" @default.
- W4362602579 hasPublicationYear "2023" @default.
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