Matches in SemOpenAlex for { <https://semopenalex.org/work/W4366198744> ?p ?o ?g. }
- W4366198744 abstract "Abstract Synthetic hexaploid wheat (SHW) lines are created as pre-breeding germplasm to diversify the D subgenome of hexaploid wheat and capitalize upon the untapped genetic diversity of the Aegilops tauschii gene pool. However, the phenotypes observed in the Ae . tauschii parents are not always recovered in the SHW lines, possibly due to inter-subgenome interactions. To elucidate this post-polyploidization genome reprogramming phenomenon, we performed RNA-seq of four SHW lines and their corresponding tetraploid and diploid parents, across ten tissues and three biological replicates. Homoeologue expression bias (HEB) analysis using more than 18,000 triads suggests massive suppression of homoeoalleles of the D subgenome in SHWs. Comparative transcriptome analysis of the whole-genome gene set further corroborated this finding. Alternative splicing analysis of the high-confidence genes indicates an additional layer of complexity where all five splice events are identified, and retained intron is predominant. Homoeologue expression upon resynthesis of hexaploid wheat has implications to the usage and handling of this germplasm in breeding as it relates to capturing the effects of epistatic interaction across subgenomes upon polyploidization. Special considerations must be given to this germplasm in pre-breeding activities to consider the extent of the inter-subgenome interactions on gene expression and their impact on traits for crop improvement." @default.
- W4366198744 created "2023-04-19" @default.
- W4366198744 creator A5038531184 @default.
- W4366198744 creator A5076302670 @default.
- W4366198744 creator A5080322839 @default.
- W4366198744 creator A5089464577 @default.
- W4366198744 date "2023-04-17" @default.
- W4366198744 modified "2023-09-30" @default.
- W4366198744 title "Global transcriptome analysis of allopolyploidization reveals large-scale repression of the D-subgenome in synthetic hexaploid wheat" @default.
- W4366198744 cites W1524903661 @default.
- W4366198744 cites W1968995461 @default.
- W4366198744 cites W1970198912 @default.
- W4366198744 cites W1976046867 @default.
- W4366198744 cites W1984849693 @default.
- W4366198744 cites W1998072131 @default.
- W4366198744 cites W2013892862 @default.
- W4366198744 cites W2020265469 @default.
- W4366198744 cites W2021790926 @default.
- W4366198744 cites W2028145262 @default.
- W4366198744 cites W2039394799 @default.
- W4366198744 cites W2050588644 @default.
- W4366198744 cites W2051121280 @default.
- W4366198744 cites W2066231767 @default.
- W4366198744 cites W2067420749 @default.
- W4366198744 cites W2089499317 @default.
- W4366198744 cites W2094971410 @default.
- W4366198744 cites W2098289939 @default.
- W4366198744 cites W2100975572 @default.
- W4366198744 cites W2101933588 @default.
- W4366198744 cites W2103194389 @default.
- W4366198744 cites W2108529208 @default.
- W4366198744 cites W2112894653 @default.
- W4366198744 cites W2113409229 @default.
- W4366198744 cites W2114104545 @default.
- W4366198744 cites W2116281723 @default.
- W4366198744 cites W2125105412 @default.
- W4366198744 cites W2131271579 @default.
- W4366198744 cites W2138471074 @default.
- W4366198744 cites W2147614235 @default.
- W4366198744 cites W2152650625 @default.
- W4366198744 cites W2164791845 @default.
- W4366198744 cites W2164969758 @default.
- W4366198744 cites W2169335408 @default.
- W4366198744 cites W2169456326 @default.
- W4366198744 cites W2280788332 @default.
- W4366198744 cites W2491976038 @default.
- W4366198744 cites W2494383914 @default.
- W4366198744 cites W2531918958 @default.
- W4366198744 cites W2565286043 @default.
- W4366198744 cites W2594216924 @default.
- W4366198744 cites W2734942911 @default.
- W4366198744 cites W2755732539 @default.
- W4366198744 cites W2766646187 @default.
- W4366198744 cites W2777121939 @default.
- W4366198744 cites W2781873368 @default.
- W4366198744 cites W2790251212 @default.
- W4366198744 cites W2793872774 @default.
- W4366198744 cites W2886541918 @default.
- W4366198744 cites W2886785109 @default.
- W4366198744 cites W2887859127 @default.
- W4366198744 cites W2890924207 @default.
- W4366198744 cites W2895204325 @default.
- W4366198744 cites W2904507571 @default.
- W4366198744 cites W2911519895 @default.
- W4366198744 cites W2913651942 @default.
- W4366198744 cites W2940547999 @default.
- W4366198744 cites W2943467424 @default.
- W4366198744 cites W2949142526 @default.
- W4366198744 cites W2950988036 @default.
- W4366198744 cites W2951194089 @default.
- W4366198744 cites W2961407901 @default.
- W4366198744 cites W3000375864 @default.
- W4366198744 cites W3005651655 @default.
- W4366198744 cites W3010164992 @default.
- W4366198744 cites W3011550230 @default.
- W4366198744 cites W3036256434 @default.
- W4366198744 cites W3043807398 @default.
- W4366198744 cites W3045865694 @default.
- W4366198744 cites W3089071526 @default.
- W4366198744 cites W3092577802 @default.
- W4366198744 cites W3096832050 @default.
- W4366198744 cites W3097228028 @default.
- W4366198744 cites W3097557006 @default.
- W4366198744 cites W3103770521 @default.
- W4366198744 cites W3121486804 @default.
- W4366198744 cites W3122540149 @default.
- W4366198744 cites W3128783024 @default.
- W4366198744 cites W3135055887 @default.
- W4366198744 cites W3135106412 @default.
- W4366198744 cites W3137472964 @default.
- W4366198744 cites W3137956855 @default.
- W4366198744 cites W3149894050 @default.
- W4366198744 cites W3151404273 @default.
- W4366198744 cites W3152539674 @default.
- W4366198744 cites W3159259364 @default.
- W4366198744 cites W3177091572 @default.
- W4366198744 cites W3197805701 @default.
- W4366198744 cites W3204337549 @default.
- W4366198744 cites W3212061502 @default.
- W4366198744 cites W3213737925 @default.