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- W4366991708 abstract "Abstract Summary Preparing functional genomic (FG) data with diverse assay types and file formats for integration into analysis workflows that interpret genome-wide association and other studies is a significant and time-consuming challenge. Here we introduce hipFG, an automatically customized pipeline for efficient and scalable normalization of heterogenous FG data collections into standardized, indexed, rapidly searchable analysis-ready datasets while accounting for FG datatypes (e.g., chromatin interactions, genomic intervals, quantitative trait loci). Availability and Implementation hipFG is freely available at https://bitbucket.org/wanglab-upenn/hipFG . Docker container is available at https://hub.docker.com/r/wanglab/hipfg . Contact lswang@pennmedicine.upenn.edu Supplementary information Supplementary data are available as BioRxiv supplemental files." @default.
- W4366991708 created "2023-04-27" @default.
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- W4366991708 date "2023-04-25" @default.
- W4366991708 modified "2023-09-29" @default.
- W4366991708 title "hipFG: High-throughput harmonization and integration pipeline for functional genomics data" @default.
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- W4366991708 doi "https://doi.org/10.1101/2023.04.21.537695" @default.
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