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• W4377013047 abstract "Abstract Genomics analyses use large reference sequence collections, like pangenomes or taxonomic databases. SPUMONI 2 is an efficient tool for sequence classification of both short and long reads. It performs multi-class classification using a novel sampled document array. By incorporating minimizers, SPUMONI 2’s index is 65 times smaller than minimap2’s for a mock community pangenome. SPUMONI 2 achieves a speed improvement of 3-fold compared to SPUMONI and 15-fold compared to minimap2. We show SPUMONI 2 achieves an advantageous mix of accuracy and efficiency in practical scenarios such as adaptive sampling, contamination detection and multi-class metagenomics classification." @default.
• W4377013047 created "2023-05-19" @default.
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• W4377013047 date "2023-05-18" @default.
• W4377013047 modified "2023-10-14" @default.
• W4377013047 title "SPUMONI 2: improved classification using a pangenome index of minimizer digests" @default.
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• W4377013047 doi "https://doi.org/10.1186/s13059-023-02958-1" @default.
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