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• W4381550185 abstract "The tobacco thrips (Frankliniella fusca Hinds; family Thripidae; order Thysanoptera) is an important pest that can transmit viruses such as the tomato spotted wilt orthotospovirus to numerous economically important agricultural row crops and vegetables. The structural and functional genomics within the order Thysanoptera has only begun to be explored. Within the > 7000 known thysanopteran species, the melon thrips (Thrips palmi Karny) and the western flower thrips (Frankliniella occidentalis Pergrande) are the only two thysanopteran species with assembled genomes.A genome of F. fusca was assembled by long-read sequencing of DNA from an inbred line. The final assembly size was 370 Mb with a single copy ortholog completeness of ~ 99% with respect to Insecta. The annotated genome of F. fusca was compared with the genome of its congener, F. occidentalis. Results revealed many instances of lineage-specific differences in gene content. Analyses of sequence divergence between the two Frankliniella species' genomes revealed substitution patterns consistent with positive selection in ~ 5% of the protein-coding genes with 1:1 orthologs. Further, gene content related to its pest status, such as xenobiotic detoxification and response to an ambisense-tripartite RNA virus (orthotospovirus) infection was compared with F. occidentalis. Several F. fusca genes related to virus infection possessed signatures of positive selection. Estimation of CpG depletion, a mutational consequence of DNA methylation, revealed that F. fusca genes that were downregulated and alternatively spliced in response to virus infection were preferentially targeted by DNA methylation. As in many other insects, DNA methylation was enriched in exons in Frankliniella, but gene copies with homology to DNA methyltransferase 3 were numerous and fragmented. This phenomenon seems to be relatively unique to thrips among other insect groups.The F. fusca genome assembly provides an important resource for comparative genomic analyses of thysanopterans. This genomic foundation allows for insights into molecular evolution, gene regulation, and loci important to agricultural pest status." @default.
• W4381550185 created "2023-06-22" @default.
• W4381550185 creator A5009792079 @default.
• W4381550185 creator A5036078136 @default.
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• W4381550185 creator A5080167902 @default.
• W4381550185 creator A5082916801 @default.
• W4381550185 creator A5083706354 @default.
• W4381550185 date "2023-06-22" @default.
• W4381550185 modified "2023-10-16" @default.
• W4381550185 title "Pest status, molecular evolution, and epigenetic factors derived from the genome assembly of Frankliniella fusca, a thysanopteran phytovirus vector" @default.
• W4381550185 cites W1267438978 @default.
• W4381550185 cites W1484347389 @default.
• W4381550185 cites W1484660603 @default.
• W4381550185 cites W1488871786 @default.
• W4381550185 cites W1539662979 @default.
• W4381550185 cites W1900937478 @default.
• W4381550185 cites W1964511579 @default.
• W4381550185 cites W1964797108 @default.
• W4381550185 cites W1969353942 @default.
• W4381550185 cites W1974116356 @default.
• W4381550185 cites W1978295915 @default.
• W4381550185 cites W1980340421 @default.
• W4381550185 cites W1982855075 @default.
• W4381550185 cites W1983863503 @default.
• W4381550185 cites W1991066424 @default.
• W4381550185 cites W1996754922 @default.
• W4381550185 cites W1998538921 @default.
• W4381550185 cites W1999574084 @default.
• W4381550185 cites W2003330861 @default.
• W4381550185 cites W2014759893 @default.
• W4381550185 cites W2016340195 @default.
• W4381550185 cites W2037723190 @default.
• W4381550185 cites W2045641296 @default.
• W4381550185 cites W2046183549 @default.
• W4381550185 cites W2046204911 @default.
• W4381550185 cites W2046212479 @default.
• W4381550185 cites W2051397555 @default.
• W4381550185 cites W2051626983 @default.
• W4381550185 cites W2052506938 @default.
• W4381550185 cites W2054254276 @default.
• W4381550185 cites W2055742349 @default.
• W4381550185 cites W2058816652 @default.
• W4381550185 cites W2059098055 @default.
• W4381550185 cites W2065786044 @default.
• W4381550185 cites W2070056179 @default.
• W4381550185 cites W2073365346 @default.
• W4381550185 cites W2076980577 @default.
• W4381550185 cites W2082330286 @default.
• W4381550185 cites W2089048442 @default.
• W4381550185 cites W2090358797 @default.
• W4381550185 cites W2095783320 @default.
• W4381550185 cites W2096128575 @default.
• W4381550185 cites W2096549168 @default.
• W4381550185 cites W2099753867 @default.
• W4381550185 cites W2100584182 @default.
• W4381550185 cites W2101291993 @default.
• W4381550185 cites W2102619694 @default.
• W4381550185 cites W2105560569 @default.
• W4381550185 cites W2107772251 @default.
• W4381550185 cites W2108234281 @default.
• W4381550185 cites W2110335151 @default.
• W4381550185 cites W2111275196 @default.
• W4381550185 cites W2111647009 @default.
• W4381550185 cites W2114369785 @default.
• W4381550185 cites W2118059471 @default.
• W4381550185 cites W2119009154 @default.
• W4381550185 cites W2119204091 @default.
• W4381550185 cites W2119828262 @default.
• W4381550185 cites W2124166542 @default.
• W4381550185 cites W2129710424 @default.
• W4381550185 cites W2131648957 @default.
• W4381550185 cites W2134659750 @default.
• W4381550185 cites W2136382449 @default.
• W4381550185 cites W2136826997 @default.
• W4381550185 cites W2141052558 @default.
• W4381550185 cites W2141524808 @default.
• W4381550185 cites W2142678478 @default.
• W4381550185 cites W2144368480 @default.
• W4381550185 cites W2146845831 @default.
• W4381550185 cites W2150131459 @default.
• W4381550185 cites W2152656267 @default.
• W4381550185 cites W2153237715 @default.
• W4381550185 cites W2153325555 @default.
• W4381550185 cites W2155628349 @default.
• W4381550185 cites W2158804744 @default.
• W4381550185 cites W2159482845 @default.
• W4381550185 cites W2160378127 @default.
• W4381550185 cites W2160838716 @default.
• W4381550185 cites W2161745371 @default.
• W4381550185 cites W2162544781 @default.
• W4381550185 cites W2164154943 @default.
• W4381550185 cites W2165173381 @default.
• W4381550185 cites W2165463056 @default.
• W4381550185 cites W2169456326 @default.
• W4381550185 cites W2170438129 @default.
• W4381550185 cites W2170551349 @default.
• W4381550185 cites W2172873754 @default.
• W4381550185 cites W2179438025 @default.
• W4381550185 cites W2195724570 @default.

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