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• W4382893281 abstract "Abstract Molecular dynamics (MD) simulation is a powerful computational tool used in biomolecular studies to investigate the dynamics, energetics, and interactions of a wide range of biological systems at the atomic level. GROMACS is a widely used free and open-source biomolecular MD simulation software recognized for its efficiency, accuracy, and extensive range of simulation options. However, the complexity of setting up, running, and analyzing MD simulations for diverse systems often poses a significant challenge, requiring considerable time, effort, and expertise. Here, we introduce CHAPERON g , a tool that automates the GROMACS MD simulation pipelines for protein and protein-ligand systems. CHAPERON g also integrates seamlessly with GROMACS modules and third-party tools to provide comprehensive analyses of MD simulation trajectories, offering up to 20 post-simulation processing and trajectory analyses. It also streamlines and automates established pipelines for conducting and analyzing biased MD simulations via the steered MD-umbrella sampling workflow. Thus, CHAPERON g makes MD simulations more accessible to beginner GROMACS users whilst empowering experts to focus on data interpretation and other less programmable aspects of MD simulation workflows." @default.
• W4382893281 created "2023-07-03" @default.
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• W4382893281 date "2023-07-02" @default.
• W4382893281 modified "2023-09-25" @default.
• W4382893281 title "CHAPERON<i>g</i>: A tool for automated GROMACS-based molecular dynamics simulations and trajectory analyses" @default.
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• W4382893281 doi "https://doi.org/10.1101/2023.07.01.546945" @default.
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