Matches in SemOpenAlex for { <https://semopenalex.org/work/W4384524105> ?p ?o ?g. }
- W4384524105 abstract "Solanum torvum (Swartz) (2n = 24) is a wild Solanaceae plant with high economic value that is used as a rootstock in grafting for Solanaceae plants to improve the resistance to a soil-borne disease caused by root-knot nematodes (RKNs). However, the lack of a high-quality reference genome of S . torvum hinders research on the genetic basis for disease resistance and application in horticulture. Herein, we present a chromosome-level assembly of genomic sequences for S . torvum combining PacBio long reads (HiFi reads), Illumina short reads and Hi-C scaffolding technology. The assembled genome size is ~1.25 Gb with a contig N50 and scaffold N50 of 38.65 Mb and 103.02 Mb, respectively as well as a BUSCO estimate of 98%. GO enrichment and KEGG pathway analysis of the unique S . torvum genes, including NLR and ABC transporters, revealed that they were involved in disease resistance processes. RNA-seq data also confirmed that 48 NLR genes were highly expressed in roots and fibrous roots and that three homologous NLR genes ( Sto0288260.1 , Sto0201960.1 and Sto0265490.1 ) in S. torvum were significantly upregulated after RKN infection. Two ABC transporters, ABCB9 and ABCB11 were identified as the hub genes in response to RKN infection. The chromosome-scale reference genome of the S . torvum will provide insights into RKN resistance." @default.
- W4384524105 created "2023-07-18" @default.
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- W4384524105 date "2023-07-17" @default.
- W4384524105 modified "2023-10-18" @default.
- W4384524105 title "The chromosome-scale reference genome and transcriptome analysis of Solanum torvum provides insights into resistance to root-knot nematodes" @default.
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- W4384524105 doi "https://doi.org/10.3389/fpls.2023.1210513" @default.
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