FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4385283609> ?p ?o ?g. }

• W4385283609 abstract "Abstract Antarctic Krill ( Euphausia superba ) is a pivotal keystone species in the Southern Ocean ecosystem, with immense ecological and commercial significance. However, its vulnerability to climate change necessitates urgent investigation of its population genetics and adaptive responses. Historical spirit collections of Antarctic krill from the early 20th century represent an ideal opportunity for genomic research, to investigate how krill have changed over time and been impacted by predation, fishing and climate change. In this study, we assessed the utility of shotgun sequencing and exome capture for genomic analyses with historical spirit collections of Antarctic krill. Because the krill genome is very large (48Gb) two full-length transcriptomes were generated and used to identify putative targets for targeted resequencing. Skim genome sequencing allowed sample and library quality control. By comparing genome to exome resequencing of the same libraries we calculate enrichment and variant calling metrics. Full-length mitochondrial and nuclear ribosomal sequences were successfully assembled from genomic data demonstrating that endogenous DNA sequences could be assembled from historical collections. We find that exome capture provided enrichment of on-target sequence data, with increased depth and higher variant quality for targeted loci. Our findings demonstrate the feasibility of extracting genomic information from historical krill samples, despite the challenges of fragmented DNA and huge genome size unlocking such collections to provide valuable insights into past and present krill diversity, resilience, and adaptability to climate change. This approach unlocks the potential for broader genomic studies in similar samples, and for enhancing conservation efforts and fisheries management in the Southern Ocean ecosystem." @default.
• W4385283609 created "2023-07-27" @default.
• W4385283609 creator A5016826216 @default.
• W4385283609 creator A5021965576 @default.
• W4385283609 creator A5026955079 @default.
• W4385283609 creator A5041642101 @default.
• W4385283609 creator A5086214353 @default.
• W4385283609 date "2023-07-26" @default.
• W4385283609 modified "2023-09-26" @default.
• W4385283609 title "Exome capture of Antarctic krill (Euphausia superba) for cost effective population genetics of historical collections" @default.
• W4385283609 cites W1973691756 @default.
• W4385283609 cites W2009381381 @default.
• W4385283609 cites W2025852123 @default.
• W4385283609 cites W2046730309 @default.
• W4385283609 cites W2048476951 @default.
• W4385283609 cites W2050077513 @default.
• W4385283609 cites W2096118308 @default.
• W4385283609 cites W2102619694 @default.
• W4385283609 cites W2108234281 @default.
• W4385283609 cites W2131271579 @default.
• W4385283609 cites W2135581989 @default.
• W4385283609 cites W2149992227 @default.
• W4385283609 cites W2170747616 @default.
• W4385283609 cites W2580899508 @default.
• W4385283609 cites W2910448874 @default.
• W4385283609 cites W2973995848 @default.
• W4385283609 cites W3025332860 @default.
• W4385283609 cites W3084201551 @default.
• W4385283609 cites W3131055609 @default.
• W4385283609 cites W3143444146 @default.
• W4385283609 cites W3164016783 @default.
• W4385283609 cites W3183573037 @default.
• W4385283609 cites W3200897849 @default.
• W4385283609 cites W4280527956 @default.
• W4385283609 cites W4283825931 @default.
• W4385283609 cites W4322767187 @default.
• W4385283609 doi "https://doi.org/10.1101/2023.07.24.550387" @default.
• W4385283609 hasPublicationYear "2023" @default.
• W4385283609 type Work @default.
• W4385283609 citedByCount "0" @default.
• W4385283609 crossrefType "posted-content" @default.
• W4385283609 hasAuthorship W4385283609A5016826216 @default.
• W4385283609 hasAuthorship W4385283609A5021965576 @default.
• W4385283609 hasAuthorship W4385283609A5026955079 @default.
• W4385283609 hasAuthorship W4385283609A5041642101 @default.
• W4385283609 hasAuthorship W4385283609A5086214353 @default.
• W4385283609 hasConcept C104317684 @default.
• W4385283609 hasConcept C141231307 @default.
• W4385283609 hasConcept C144024400 @default.
• W4385283609 hasConcept C149923435 @default.
• W4385283609 hasConcept C16671776 @default.
• W4385283609 hasConcept C18903297 @default.
• W4385283609 hasConcept C189206191 @default.
• W4385283609 hasConcept C2775881529 @default.
• W4385283609 hasConcept C2777492549 @default.
• W4385283609 hasConcept C2778296365 @default.
• W4385283609 hasConcept C2779040068 @default.
• W4385283609 hasConcept C2908647359 @default.
• W4385283609 hasConcept C501734568 @default.
• W4385283609 hasConcept C54355233 @default.
• W4385283609 hasConcept C78458016 @default.
• W4385283609 hasConcept C86803240 @default.
• W4385283609 hasConceptScore W4385283609C104317684 @default.
• W4385283609 hasConceptScore W4385283609C141231307 @default.
• W4385283609 hasConceptScore W4385283609C144024400 @default.
• W4385283609 hasConceptScore W4385283609C149923435 @default.
• W4385283609 hasConceptScore W4385283609C16671776 @default.
• W4385283609 hasConceptScore W4385283609C18903297 @default.
• W4385283609 hasConceptScore W4385283609C189206191 @default.
• W4385283609 hasConceptScore W4385283609C2775881529 @default.
• W4385283609 hasConceptScore W4385283609C2777492549 @default.
• W4385283609 hasConceptScore W4385283609C2778296365 @default.
• W4385283609 hasConceptScore W4385283609C2779040068 @default.
• W4385283609 hasConceptScore W4385283609C2908647359 @default.
• W4385283609 hasConceptScore W4385283609C501734568 @default.
• W4385283609 hasConceptScore W4385283609C54355233 @default.
• W4385283609 hasConceptScore W4385283609C78458016 @default.
• W4385283609 hasConceptScore W4385283609C86803240 @default.
• W4385283609 hasLocation W43852836091 @default.
• W4385283609 hasOpenAccess W4385283609 @default.
• W4385283609 hasPrimaryLocation W43852836091 @default.
• W4385283609 hasRelatedWork W2034695662 @default.
• W4385283609 hasRelatedWork W2043752678 @default.
• W4385283609 hasRelatedWork W2073059575 @default.
• W4385283609 hasRelatedWork W2142394595 @default.
• W4385283609 hasRelatedWork W2563693825 @default.
• W4385283609 hasRelatedWork W3009241253 @default.
• W4385283609 hasRelatedWork W3025129246 @default.
• W4385283609 hasRelatedWork W3048251580 @default.
• W4385283609 hasRelatedWork W3126258741 @default.
• W4385283609 hasRelatedWork W4366201251 @default.
• W4385283609 isParatext "false" @default.
• W4385283609 isRetracted "false" @default.
• W4385283609 workType "article" @default.