FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4385330109> ?p ?o ?g. }

• W4385330109 abstract "Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in genome evolution, gene expression regulation as well as their epigenetic regulation are still not well understood, especially in a large number of closely related species.Here, we analyzed the abundance and dynamic evolution of LTR-RTs in 54 species from an economically and agronomically important family, Fabaceae, and also selected two representative species for further analysis in expression of associated genes, transcriptional activity and DNA methylation patterns of LTR-RTs. Annotation results revealed highly varied proportions of LTR-RTs in these genomes (5.1%~68.4%) and their correlation with genome size was highly positive, and they were significantly contributed to the variance in genome size through species-specific unique amplifications. Almost all of the intact LTR-RTs were inserted into the genomes 4 Mya (million years ago), and more than 50% of them were inserted in the last 0.5 million years, suggesting that recent amplifications of LTR-RTs were an important force driving genome evolution. In addition, expression levels of genes with intronic, promoter, and downstream LTR-RT insertions of Glycine max and Vigna radiata, two agronomically important crops in Fabaceae, showed that the LTR-RTs located in promoter or downstream regions suppressed associated gene expression. However, the LTR-RTs within introns promoted gene expression or had no contribution to gene expression. Additionally, shorter and younger LTR-RTs maintained higher mobility and transpositional potential. Compared with the transcriptionally silent LTR-RTs, the active elements showed significantly lower DNA methylation levels in all three contexts. The distributions of transcriptionally active and silent LTR-RT methylation varied across different lineages due to the position of LTR-RTs located or potentially epigenetic regulation.Lineage-specific amplification patterns were observed and higher methylation level may repress the activity of LTR-RTs, further influence evolution in Fabaceae species. This study offers valuable clues into the evolution, function, transcriptional activity and epigenetic regulation of LTR-RTs in Fabaceae genomes." @default.
• W4385330109 created "2023-07-29" @default.
• W4385330109 creator A5010903174 @default.
• W4385330109 creator A5012916479 @default.
• W4385330109 creator A5020052802 @default.
• W4385330109 creator A5026810767 @default.
• W4385330109 creator A5031810848 @default.
• W4385330109 creator A5040458157 @default.
• W4385330109 creator A5046173951 @default.
• W4385330109 creator A5054459491 @default.
• W4385330109 creator A5070154996 @default.
• W4385330109 creator A5077413146 @default.
• W4385330109 creator A5080214478 @default.
• W4385330109 creator A5081330408 @default.
• W4385330109 creator A5090589891 @default.
• W4385330109 date "2023-07-27" @default.
• W4385330109 modified "2023-10-07" @default.
• W4385330109 title "Lineage-specific amplification and epigenetic regulation of LTR-retrotransposons contribute to the structure, evolution, and function of Fabaceae species" @default.
• W4385330109 cites W1554644662 @default.
• W4385330109 cites W1900937478 @default.
• W4385330109 cites W1997270596 @default.
• W4385330109 cites W2005205149 @default.
• W4385330109 cites W2008727691 @default.
• W4385330109 cites W2012986985 @default.
• W4385330109 cites W2017728427 @default.
• W4385330109 cites W2019674169 @default.
• W4385330109 cites W2024848067 @default.
• W4385330109 cites W2026343134 @default.
• W4385330109 cites W2031611770 @default.
• W4385330109 cites W2035644750 @default.
• W4385330109 cites W2044231545 @default.
• W4385330109 cites W2046183549 @default.
• W4385330109 cites W2054254276 @default.
• W4385330109 cites W2080177252 @default.
• W4385330109 cites W2094010911 @default.
• W4385330109 cites W2110335151 @default.
• W4385330109 cites W2111647009 @default.
• W4385330109 cites W2112494824 @default.
• W4385330109 cites W2116659955 @default.
• W4385330109 cites W2122263911 @default.
• W4385330109 cites W2128018453 @default.
• W4385330109 cites W2131374955 @default.
• W4385330109 cites W2132926880 @default.
• W4385330109 cites W2137455182 @default.
• W4385330109 cites W2138207763 @default.
• W4385330109 cites W2146641337 @default.
• W4385330109 cites W2152669810 @default.
• W4385330109 cites W2153452535 @default.
• W4385330109 cites W2154180530 @default.
• W4385330109 cites W2155288174 @default.
• W4385330109 cites W2156125289 @default.
• W4385330109 cites W2160378127 @default.
• W4385330109 cites W2162531367 @default.
• W4385330109 cites W2162574518 @default.
• W4385330109 cites W2174324988 @default.
• W4385330109 cites W2189052984 @default.
• W4385330109 cites W2275033707 @default.
• W4385330109 cites W2313039456 @default.
• W4385330109 cites W2591630414 @default.
• W4385330109 cites W2611735579 @default.
• W4385330109 cites W2743858268 @default.
• W4385330109 cites W2767039525 @default.
• W4385330109 cites W2772231999 @default.
• W4385330109 cites W2782634000 @default.
• W4385330109 cites W2788682180 @default.
• W4385330109 cites W2804233573 @default.
• W4385330109 cites W2905515949 @default.
• W4385330109 cites W2914451236 @default.
• W4385330109 cites W2920529045 @default.
• W4385330109 cites W2922281162 @default.
• W4385330109 cites W2932391302 @default.
• W4385330109 cites W2947250456 @default.
• W4385330109 cites W2950978662 @default.
• W4385330109 cites W2951912016 @default.
• W4385330109 cites W2964849163 @default.
• W4385330109 cites W2971585857 @default.
• W4385330109 cites W2995612051 @default.
• W4385330109 cites W3017119031 @default.
• W4385330109 cites W3043532768 @default.
• W4385330109 cites W3045804746 @default.
• W4385330109 cites W3123944293 @default.
• W4385330109 cites W3131992635 @default.
• W4385330109 cites W3156458251 @default.
• W4385330109 cites W3210932099 @default.
• W4385330109 cites W4212957584 @default.
• W4385330109 cites W4220945192 @default.
• W4385330109 cites W4237832699 @default.
• W4385330109 cites W4294733846 @default.
• W4385330109 doi "https://doi.org/10.1186/s12864-023-09530-y" @default.
• W4385330109 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/37501164" @default.
• W4385330109 hasPublicationYear "2023" @default.
• W4385330109 type Work @default.
• W4385330109 citedByCount "0" @default.
• W4385330109 crossrefType "journal-article" @default.
• W4385330109 hasAuthorship W4385330109A5010903174 @default.
• W4385330109 hasAuthorship W4385330109A5012916479 @default.
• W4385330109 hasAuthorship W4385330109A5020052802 @default.
• W4385330109 hasAuthorship W4385330109A5026810767 @default.
• W4385330109 hasAuthorship W4385330109A5031810848 @default.
• W4385330109 hasAuthorship W4385330109A5040458157 @default.

• next