FRINK Linked Data Fragments server

Matches in SemOpenAlex for { <https://semopenalex.org/work/W4385898770> ?p ?o ?g. }

• W4385898770 abstract "The importance and rate of development of genome-scale metabolic models have been growing for the last few years, increasing the demand for software solutions that automate several steps of this process. However, since TRIAGE's release, software development for the automatic integration of transport reactions into models has stalled.Here, we present the Transport Systems Tracker (TranSyT). Unlike other transport systems annotation software, TranSyT does not rely on manual curation to expand its internal database, which is derived from highly curated records retrieved from the Transporters Classification Database and complemented with information from other data sources. TranSyT compiles information regarding transporter families and proteins, and derives reactions into its internal database, making it available for rapid annotation of complete genomes. All transport reactions have GPR associations and can be exported with identifiers from four different metabolite databases. TranSyT is currently available as a plugin for merlin v4.0 and an app for KBase.TranSyT web service: https://transyt.bio.di.uminho.pt/; GitHub for the tool: https://github.com/BioSystemsUM/transyt; GitHub with examples and instructions to run TranSyT: https://github.com/ecunha1996/transyt_paper." @default.
• W4385898770 created "2023-08-18" @default.
• W4385898770 creator A5017949757 @default.
• W4385898770 creator A5044535959 @default.
• W4385898770 creator A5044587877 @default.
• W4385898770 creator A5057203488 @default.
• W4385898770 creator A5058280742 @default.
• W4385898770 creator A5080202278 @default.
• W4385898770 date "2023-08-01" @default.
• W4385898770 modified "2023-10-16" @default.
• W4385898770 title "<i>TranSyT</i>, an innovative framework for identifying transport systems" @default.
• W4385898770 cites W1948859177 @default.
• W4385898770 cites W1975729005 @default.
• W4385898770 cites W1985451258 @default.
• W4385898770 cites W1996034592 @default.
• W4385898770 cites W2004548026 @default.
• W4385898770 cites W2034890899 @default.
• W4385898770 cites W2041786550 @default.
• W4385898770 cites W2051014867 @default.
• W4385898770 cites W2057741472 @default.
• W4385898770 cites W2072167135 @default.
• W4385898770 cites W2079244604 @default.
• W4385898770 cites W2085966233 @default.
• W4385898770 cites W2085993965 @default.
• W4385898770 cites W2090075451 @default.
• W4385898770 cites W2100084634 @default.
• W4385898770 cites W2113024448 @default.
• W4385898770 cites W2113948304 @default.
• W4385898770 cites W2133452284 @default.
• W4385898770 cites W2135834023 @default.
• W4385898770 cites W2136563879 @default.
• W4385898770 cites W2142237411 @default.
• W4385898770 cites W2144944670 @default.
• W4385898770 cites W2147472054 @default.
• W4385898770 cites W2202347610 @default.
• W4385898770 cites W2295215653 @default.
• W4385898770 cites W2343726422 @default.
• W4385898770 cites W2557833792 @default.
• W4385898770 cites W2618327118 @default.
• W4385898770 cites W2764202526 @default.
• W4385898770 cites W2859249641 @default.
• W4385898770 cites W2966778855 @default.
• W4385898770 cites W2977870980 @default.
• W4385898770 cites W3000015309 @default.
• W4385898770 cites W3105895642 @default.
• W4385898770 cites W3109735703 @default.
• W4385898770 cites W3112376646 @default.
• W4385898770 cites W4233659707 @default.
• W4385898770 cites W4282838866 @default.
• W4385898770 cites W4317234059 @default.
• W4385898770 doi "https://doi.org/10.1093/bioinformatics/btad466" @default.
• W4385898770 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/37589572" @default.
• W4385898770 hasPublicationYear "2023" @default.
• W4385898770 type Work @default.
• W4385898770 citedByCount "1" @default.
• W4385898770 crossrefType "journal-article" @default.
• W4385898770 hasAuthorship W4385898770A5017949757 @default.
• W4385898770 hasAuthorship W4385898770A5044535959 @default.
• W4385898770 hasAuthorship W4385898770A5044587877 @default.
• W4385898770 hasAuthorship W4385898770A5057203488 @default.
• W4385898770 hasAuthorship W4385898770A5058280742 @default.
• W4385898770 hasAuthorship W4385898770A5080202278 @default.
• W4385898770 hasBestOaLocation W43858987701 @default.
• W4385898770 hasConcept C111919701 @default.
• W4385898770 hasConcept C127413603 @default.
• W4385898770 hasConcept C154945302 @default.
• W4385898770 hasConcept C22212356 @default.
• W4385898770 hasConcept C2776321320 @default.
• W4385898770 hasConcept C2777904410 @default.
• W4385898770 hasConcept C2778391309 @default.
• W4385898770 hasConcept C41008148 @default.
• W4385898770 hasConcept C64543145 @default.
• W4385898770 hasConcept C77088390 @default.
• W4385898770 hasConcept C98045186 @default.
• W4385898770 hasConceptScore W4385898770C111919701 @default.
• W4385898770 hasConceptScore W4385898770C127413603 @default.
• W4385898770 hasConceptScore W4385898770C154945302 @default.
• W4385898770 hasConceptScore W4385898770C22212356 @default.
• W4385898770 hasConceptScore W4385898770C2776321320 @default.
• W4385898770 hasConceptScore W4385898770C2777904410 @default.
• W4385898770 hasConceptScore W4385898770C2778391309 @default.
• W4385898770 hasConceptScore W4385898770C41008148 @default.
• W4385898770 hasConceptScore W4385898770C64543145 @default.
• W4385898770 hasConceptScore W4385898770C77088390 @default.
• W4385898770 hasConceptScore W4385898770C98045186 @default.
• W4385898770 hasIssue "8" @default.
• W4385898770 hasLocation W43858987701 @default.
• W4385898770 hasLocation W43858987702 @default.
• W4385898770 hasLocation W43858987703 @default.
• W4385898770 hasOpenAccess W4385898770 @default.
• W4385898770 hasPrimaryLocation W43858987701 @default.
• W4385898770 hasRelatedWork W1529400504 @default.
• W4385898770 hasRelatedWork W1892467659 @default.
• W4385898770 hasRelatedWork W2143954309 @default.
• W4385898770 hasRelatedWork W2333703843 @default.
• W4385898770 hasRelatedWork W2374348909 @default.
• W4385898770 hasRelatedWork W2394022102 @default.
• W4385898770 hasRelatedWork W2469937864 @default.
• W4385898770 hasRelatedWork W2808586768 @default.
• W4385898770 hasRelatedWork W2998403542 @default.

• next