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• W4386030782 abstract "Abstract Fragments derived from small RNAs such as small nucleolar RNAs hold biological relevance. However, they remain poorly understood, calling for more comprehensive methods for analysis. We developed sRNAfrag, a standardized workflow and set of scripts to quantify and analyze sRNA fragmentation of any biotype. In a benchmark, it is able to detect loci of mature microRNAs fragmented from precursors and, utilizing multi-mapping events, the conserved 5’ seed sequence of miRNAs which we believe may extraoplate to other small RNA fragments. The tool detected 1411 snoRNA fragment conservation events between 2/4 eukaryotic species, providing the opportunity to explore motifs and fragmentation patterns not only within species, but between. Availability: https://github.com/kenminsoo/sRNAfrag ." @default.
• W4386030782 created "2023-08-22" @default.
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• W4386030782 date "2023-08-21" @default.
• W4386030782 modified "2023-10-09" @default.
• W4386030782 title "sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data" @default.
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• W4386030782 doi "https://doi.org/10.1101/2023.08.19.553943" @default.
• W4386030782 hasPubMedId "https://pubmed.ncbi.nlm.nih.gov/37662282" @default.
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