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• W4386156689 abstract "Many existing software libraries for genomics require researchers to pick between competing considerations: the performance of compiled languages and the accessibility of interpreted languages. Go, a modern compiled language, provides an opportunity to address this conflict. We introduce Gonomics, an open-source collection of command line programs and bioinformatic libraries implemented in Go that unites readability and performance for genomic analyses. Gonomics contains packages to read, write, and manipulate a wide array of file formats (e.g. FASTA, FASTQ, BED, BEDPE, SAM, BAM, and VCF), and can convert and interface between these formats. Furthermore, our modular library structure provides a flexible platform for researchers developing their own software tools to address specific questions. These commands can be combined and incorporated into complex pipelines to meet the growing need for high-performance bioinformatic resources.Gonomics is implemented in the Go programming language. Source code, installation instructions, and documentation are freely available at https://github.com/vertgenlab/gonomics." @default.
• W4386156689 created "2023-08-26" @default.
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• W4386156689 date "2023-08-01" @default.
• W4386156689 modified "2023-09-26" @default.
• W4386156689 title "Gonomics: Uniting high performance and readability for genomics with Go" @default.
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• W4386156689 doi "https://doi.org/10.1093/bioinformatics/btad516" @default.
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