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- W4386944840 abstract "Since the advent of ColabFold, numerous software packages have been provided with Google Colaboratory-compatible ipynb files, allowing users to effortlessly test and reproduce results without the need for local installation or configuration. MEGADOCK, a protein-protein docking tool, is particularly well-suited for Google Colaboratory due to its lightweight computations and GPU acceleration capabilities. To increase accessibility and promote widespread use, it is crucial to provide a computing environment compatible with Google Colaboratory.In this study, we report the development of a Google Colaboratory environment for running our protein-protein docking software, MEGADOCK. We provide a comprehensive ipynb file, including the compilation of MEGADOCK with the FFTW library installation on Colaboratory, the introduction of related tools using PyPI/apt, and the execution and visualization of docking structures. This streamlined environment enables users to visualize docking structures with just one click. The code is available under a CC-BY NC 4.0 license from https://github.com/ohuelab/MEGADOCK-on-Colab ." @default.
- W4386944840 created "2023-09-23" @default.
- W4386944840 creator A5061510293 @default.
- W4386944840 date "2023-09-22" @default.
- W4386944840 modified "2023-10-14" @default.
- W4386944840 title "MEGADOCK-on-Colab: an easy-to-use protein–protein docking tool on Google Colaboratory" @default.
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- W4386944840 doi "https://doi.org/10.1186/s13104-023-06505-w" @default.
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- W4386944840 hasPublicationYear "2023" @default.
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